Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_H01
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30) 68 7e-12
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079) 30 1.6
SB_9755| Best HMM Match : Sushi (HMM E-Value=0) 29 3.7
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9) 28 6.5
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_17775| Best HMM Match : Coiled (HMM E-Value=2.3) 28 6.5
SB_46776| Best HMM Match : Deltaretro_Tax (HMM E-Value=7.4) 27 8.6
>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
Length = 92
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/57 (56%), Positives = 39/57 (68%)
Frame = +3
Query: 276 IFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 446
I GRK G PSHF S S+AR L+ LE +KLVEK GGR +T+QG+RD+DRI
Sbjct: 32 IRAGRKNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +2
Query: 116 TGKVKVPEHMDLVKTARFKELAPI*P 193
+G +K+P+ +DLVKT +FKELAP P
Sbjct: 2 SGNLKIPDWVDLVKTGKFKELAPYDP 27
>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 203 LCALCCHPSSYLHSLTCWSKDCHQ 274
LC+ C S+ H+LTC ++ CHQ
Sbjct: 99 LCSQSCVWESHCHALTCTARICHQ 122
>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 195 DWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEAL 374
D +YVR A + I + G + +I R+R VTPS S G + L L+ +
Sbjct: 57 DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116
Query: 375 KL 380
+L
Sbjct: 117 QL 118
>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
Length = 689
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/50 (26%), Positives = 19/50 (38%)
Frame = +2
Query: 206 CALCCHPSSYLHSLTCWSKDCHQDLWWAQT*WSYTFTFLQVIRQYCTQGF 355
C +CC L L C + CH W W + + +C +GF
Sbjct: 184 CIICCEGDDELELLPCCKQPCHYPCLWK---WVHAHLTPRSTCPHCRKGF 230
>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1351
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 314 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 406
TF ++ C +GF ++G +S+G+WS
Sbjct: 21 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51
>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 314 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 406
TF ++ C +GF ++G +S+G+WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 314 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 406
TF + C +GF ++G + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142
>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
Length = 521
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 6 GRCFLPVANTRSRCVPSQ 59
GRCF + N RSRC P++
Sbjct: 57 GRCFAYITNRRSRCRPNR 74
>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 67 C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDS 162
C QDC + RC +KNG + T A G CK S
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGS 331
>SB_17775| Best HMM Match : Coiled (HMM E-Value=2.3)
Length = 877
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -1
Query: 82 LVLFNILYCDGTHLDLV 32
LVL++ L+ +GTHLDLV
Sbjct: 265 LVLWDALFAEGTHLDLV 281
>SB_46776| Best HMM Match : Deltaretro_Tax (HMM E-Value=7.4)
Length = 332
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 29 QHKVKMRSVTVKDVEQDKIVKTVAAHLK 112
+ K +R++ VKD Q +++K++ H K
Sbjct: 23 EEKTSLRTIIVKDENQSRLLKSLKEHFK 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,310,451
Number of Sequences: 59808
Number of extensions: 333060
Number of successful extensions: 838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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