Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_H01
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.98 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.3  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   6.9  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 60  TVTERILTLCWQPEESI 10
           T TER+  LCW  +E I
Sbjct: 203 TPTERLEALCWTQDEDI 219


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 60  TVTERILTLCWQPEESI 10
           T TER+  LCW  +E +
Sbjct: 150 TPTERLEALCWTQDEDV 166


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 115 NGQSQGT*AHGSCKDSSLQRAG 180
           NG+ +   AHG  ++ +LQ+AG
Sbjct: 419 NGEFEVEPAHGEDREEALQKAG 440


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 8   PMLSSGCQHKVKMRSVTVKDVEQDKI 85
           P+LS  C   +K+ S  +  VE+D I
Sbjct: 58  PLLSCACPDGLKLLSDGLMCVEKDSI 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,598
Number of Sequences: 438
Number of extensions: 2692
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)