Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G24
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    29   0.33 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   2.3  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   3.1  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    26   3.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   5.4  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   7.2  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    24   9.5  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    24   9.5  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 29.1 bits (62), Expect = 0.33
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 170 VVAVTRVDLLRSC-QSYNEDGEQNEQFREHFEQFSK 66
           ++ V R +L+R C   +NE  E  E F+  ++ FSK
Sbjct: 383 IMKVIRKNLVRRCLDMFNEIAEDKENFKTFYDAFSK 418


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 154 LVTATTITDIRIQATSVIPDTVPWPMDRTVAMLPL 258
           +V  TTIT +     +++ +T+  PM+ T  +LP+
Sbjct: 120 MVETTTITPMVEAMITLMEETMTTPMEETTTILPM 154


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 101 EQFREHFEQFSKLTDDLGHRRVTTLKKI 18
           E FREHF+  S L D +G  R     KI
Sbjct: 375 EDFREHFKTVSALMDCVGCERCRLWGKI 402


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 92  REHFEQFSKLTDDLGHRRVTTLKKICS 12
           R+H  QFS +T+ LG   +  ++ ICS
Sbjct: 217 RDHVNQFSIITELLGTPPMEVIETICS 243


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 65   TLKTAQNVRETVHSVRR--PRCSSGKT 139
            T+   Q +R+ +H++R+  PR SS KT
Sbjct: 1161 TITAEQEMRDLLHNIRQPLPRSSSSKT 1187


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  RSSVNFENCSKCSRNCSFCSPSSL*LWQD 138
           R + ++ N  KC +N    SP++  LW D
Sbjct: 87  RETKDYNNSLKCYQNALAISPNNESLWYD 115


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 83  FEQFSKLTDDLGHRRVTTLKKICSS 9
           F+ F +L+ D+ H  V   KK+CS+
Sbjct: 649 FKNF-RLSTDISHSNVRNSKKLCSN 672


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 134 CQSYNEDGEQNEQFREHFEQFSKLTDDLG 48
           CQ Y E G Q  +     +QF+K   D+G
Sbjct: 422 CQVYKEVGLQTHERGLTSDQFAKFLTDIG 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,106,161
Number of Sequences: 5004
Number of extensions: 18059
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)