Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G24
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       29   1.8  
SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)              28   4.2  
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_52236| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     27   7.3  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 170 VVAVTRVDLLRSCQS-YNEDGEQNEQFREHFEQFSK 66
           ++ V R +L++ C   +NE  E  + +++ +EQF K
Sbjct: 339 ILKVIRKNLVKKCMELFNEIAEDQDNYKKFYEQFGK 374


>SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)
          Length = 716

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 22  FFNVVTRRCPRSSVNFENCSKCSRNCSFCSPSS 120
           FF+  T    + ++  +N SKCSRN  F  P++
Sbjct: 17  FFDAETDVVHQMTLTVQNLSKCSRNIRFHGPAT 49


>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 68  LKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQL-RIYVSRLRRLSRIQSPGLWIVRW 244
           L     + ETV  VR+      +      W  L +L     +R R  SR +  G W+V W
Sbjct: 170 LNGESGLNETVFKVRKVLSKHKEAMNASPWRSLPELTNAGGARCRDSSRPRR-GPWLVCW 228

Query: 245 LCCLS 259
            CC++
Sbjct: 229 TCCMT 233


>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 104 NEQFREHFEQFSKLTDDLGHRRVTTLKKICSS 9
           +E+    FE+FS   DD+G   +  LK+ICSS
Sbjct: 189 DEEIEREFEEFSITIDDVG--ILDKLKEICSS 218


>SB_52236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 203 LSRIQSPGLWIVRWLCCLSIQP 268
           LS +  PGL ++R LC LS QP
Sbjct: 18  LSNVFLPGLTLIRSLCTLSNQP 39


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 116 DGEQNEQFREHFEQFSKLTDDLGHRRVTTLK 24
           +G  N   +EH  Q  +L D++  +RVT  K
Sbjct: 265 EGAHNSSAQEHAHQLQELRDEMEQQRVTLRK 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,467,258
Number of Sequences: 59808
Number of extensions: 141407
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)