Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G18
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         33   0.20 
SB_6285| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_52926| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)            30   2.4  

>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 433 SKRNYLDKTSNKSYSVINCMYAI-IYKFKYRNKISNCNYELS 555
           S R YLDK  NK+Y+    +  + IY  K RNK SN  Y+LS
Sbjct: 207 SLRIYLDKIRNKAYNGTYDVSPLRIYLDKIRNKASNGTYDLS 248



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 403 NNEYENVNKISK-RNYLDKTSNKSYSVINCMYAI-IYKFKYRNKISNCNYELS 555
           N  Y     +S  R +LDK  NK+ +    + ++ IY  K RNK SN  Y+LS
Sbjct: 133 NKAYNGTYDVSPLRIHLDKIRNKACNGTYDVSSLRIYLDKIRNKASNGTYDLS 185


>SB_6285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 33  HFWL*KFYFNIFLMFNL*VMRWQGYISSYCNSPK 134
           H W  + Y   ++   L  M+W+ Y+ +YC   K
Sbjct: 58  HSWFERQYVGSWIQGKLLAMKWESYVDAYCKQGK 91


>SB_52926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 33  HFWL*KFYFNIFLMFNL*VMRWQGYISSYCNSPK 134
           H W  + Y   ++   L  M+W+ Y+ +YC   K
Sbjct: 13  HSWFERQYVGSWIQGKLLAMKWESYVDAYCKQGK 46


>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
          Length = 1235

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/58 (25%), Positives = 35/58 (60%)
 Frame = +1

Query: 385  DKDI*YNNEYENVNKISKRNYLDKTSNKSYSVINCMYAIIYKFKYRNKISNCNYELST 558
            D D  +++  E +NK   R+ L+K +     +IN +++++ KF  R ++++C ++ +T
Sbjct: 1133 DLDDLHHHHVEYLNKAIFRSLLNKKAAPVMKIINDIFSLVLKF--RAQLNSCPWQQAT 1188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,724,453
Number of Sequences: 59808
Number of extensions: 236039
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)