Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G17
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              134   5e-32
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.52 
SB_59757| Best HMM Match : Gly_radical (HMM E-Value=3.5)               29   2.8  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   6.4  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  134 bits (323), Expect = 5e-32
 Identities = 68/115 (59%), Positives = 78/115 (67%)
 Frame = +1

Query: 28  PPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKEV 207
           PPKKD K  AK+PQ                           LNN VLFDK TY+KLYKEV
Sbjct: 1   PPKKDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGKVRDK-LNNLVLFDKATYDKLYKEV 59

Query: 208 PQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 372
           P Y+LITP+VVSERLK+RGSLARRAL+EL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 60  PSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -3

Query: 332  WCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLF 153
            WC     +RPF LSS++  L R      +  ++ GV     GT     S  G++   W  
Sbjct: 2144 WCGPVYFVRPFCLSSIAYRLIRA-----IMSSSLGVACSPVGTKAPGVSSGGITRTIWSA 2198

Query: 152  NLSRTFPL 129
            + +R  P+
Sbjct: 2199 SRTREMPV 2206


>SB_59757| Best HMM Match : Gly_radical (HMM E-Value=3.5)
          Length = 389

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = -2

Query: 393 YHSLCDWII---ALGRTCVDH------LPMVLDYLFDETFFPKL 289
           YH+ CDW+      G TC+ H         +L+YLF   F P++
Sbjct: 65  YHAFCDWLFDGSNAGYTCLAHNFKGYDYYFILEYLFTNGFKPEV 108


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 206 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 123
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,811
Number of Sequences: 59808
Number of extensions: 292916
Number of successful extensions: 932
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)