Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G15
         (836 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    29   0.046
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.2  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   6.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   6.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   6.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.1  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   9.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 29.1 bits (62), Expect = 0.046
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 717  VNIPLMRQNEIILGLDVSDESGRVIGKSXIAPVKGISQV 833
            +N+ +    E+  GL V D+SGR +  S +AP  G S +
Sbjct: 888  INMIVQEVPEVPYGLKVLDKSGRSVQLSWVAPFDGNSPI 926


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/71 (22%), Positives = 24/71 (33%)
 Frame = +2

Query: 443 SYYRCYVTVVQNSNSRSLLAMGEPVFQCSSKLHK*ECQFSPNHQTDGSGIRVCDISCHDH 622
           S Y C     QN     +   G  +  C S  +   C+    ++ D +  +  D  C D 
Sbjct: 376 SGYDCDSNPCQNGGVCRISDGGGYICDCPSGTNGTNCEIDTINECDSNPCKHLDAICQDK 435

Query: 623 GPDLQVRCSEK 655
             D    C  K
Sbjct: 436 LGDYACYCPPK 446


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 139 KIKCLKKRE*TSPNHCGTRAHLWEGSDILP 228
           KI CLK       ++ G  A + EGS  LP
Sbjct: 30  KISCLKTTPPPEEDNRGCAASVGEGSFYLP 59


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 132 T*KNKMPEEKRIDITQPLWDQS 197
           T K K  E++ ++ T+P+W ++
Sbjct: 268 TIKEKYTEDEELNKTKPIWTRN 289


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 220 CRNLPTNVLWSHSGWVMSILFSSGIL 143
           C    TN +WSH   V++     GIL
Sbjct: 140 CTPNATNTVWSHCQCVLADGVERGIL 165


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 220 CRNLPTNVLWSHSGWVMSILFSSGIL 143
           C    TN +WSH   V++     GIL
Sbjct: 140 CTPNATNTVWSHCQCVLADGVERGIL 165


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +1

Query: 364 MNQHSIQTAGSCRMFSVECHSK 429
           M  H      +C M  VEC  K
Sbjct: 490 MGYHGFHNPFTCNMCGVECSDK 511


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 425 PNARRLSYYRCYVTVVQNSNSRSLLAMGEPVF 520
           P  R   Y  C VT +   ++ S++   +P++
Sbjct: 24  PKTRAKIYALCVVTALVTPSALSIIYYRQPIY 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,093
Number of Sequences: 336
Number of extensions: 4588
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)