Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G15
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    82   1e-16
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   3.3  

>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
 Frame = +3

Query: 336 EQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYRTATAVVFWQWVNQ 515
           E V  AK++ +S  HPD+ E   +  RMS  +    ++T  MLQ        VFWQW+NQ
Sbjct: 62  ETVWHAKKIVDSTLHPDTKEPVFLPFRMSCFVLTNLVVTAGMLQPNLGTAGTVFWQWMNQ 121

Query: 516 SFNALVNYTNRNANSPLTTKQMGVAYVSATSAAMTTA-----LIFKFGVQKRAKNPILXX 680
           S N   N  N N ++ LT  QM  +Y+ A SA+   A     ++ +      +   +L  
Sbjct: 122 SVNVAFNSANANKSTQLTLPQMTKSYIYAVSASCGVAIGLNKIVPRMNFLSSSSKAVLGR 181

Query: 681 XXXXXXXXXXNWVNIPLMRQNEIILGLDVSDESGRVIGKSXIAPVKGISQ 830
                       +N+ LMR  E+  G+DV D+ G  +GKS  A    + +
Sbjct: 182 LTPFAAVASAGVLNVFLMRGEELRQGIDVFDKEGESLGKSKKAAFYAVGE 231


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -2

Query: 733 ISGMFTQLAAATATNGTKRAKIGFFA--LF*TPNLKIRAVVMAADVADTYA 587
           ISG FT+++  +++NG + AK+ F +   F   +L      ++ D+ D+Y+
Sbjct: 187 ISGNFTEISPFSSSNGPQIAKLAFRSNNSFSQNSLNRNLSSVSCDLTDSYS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,479,535
Number of Sequences: 5004
Number of extensions: 73243
Number of successful extensions: 178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)