Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G14
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   4.3  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   5.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.7  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    26   7.5  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   7.5  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    25   10.0 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   10.0 

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 792 FYCSRR*HEFTICCYRXYLTSQPEYLHRLIIC 697
           F+ +   HEF + CYR YL S+      +I C
Sbjct: 142 FFSAECDHEFCLACYRQYLDSRISEGESVIQC 173


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 499 SRPRLWITDYVPSRMTYAITIYQICF 422
           +RP LW+TDY  S   Y +    + F
Sbjct: 368 NRPALWLTDYDQSNPYYTVIKTMVAF 393


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
 Frame = +3

Query: 720 IRVVMSNNXDNSRW*THATVWSN------KIYISVNILXSSFT 830
           + +    N     W  H+T+W+N      +IY     L SSFT
Sbjct: 441 VMIYTRQNAGYDFWQVHSTIWANNGDALARIYTGTGALKSSFT 483


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 661 ERRIASCQK*LTNPLFVSQDYYLG 590
           + +I+SC    +N LF+ QD+ LG
Sbjct: 830 DAKISSCIPFFSNKLFIDQDFILG 853


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 446 RVSHTTWNIVRNP*SWSRVSDNCYRKDTIASSFKFIV 556
           RV H  W     P  WS   ++C R+    + ++FI+
Sbjct: 66  RVIHQLWKDENIPERWSNTVNSCRRQHPDENGWQFIL 102


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 715 PSTHYLHIIYNSSSPF-KLERRIASCQK 635
           PS  YL +IYNS  PF    RR+ + Q+
Sbjct: 394 PSHPYLSLIYNSIQPFTHWSRRLLTFQR 421


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 542 MNSRWYPYDSSYQKL*TKIMD-YGLCSKSYDLRDY 441
           +  R  PY S+Y      I++ YG+CS    L+DY
Sbjct: 231 IRQRLNPYFSNYNLTNDDILNLYGICSYEIALQDY 265


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 301 HKL*QISFFNYSFYIEYHVSRSWY 230
           H+L ++ + N +FY  Y+ SRSW+
Sbjct: 488 HRLPEVQW-NRAFYKTYYESRSWF 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,195
Number of Sequences: 5004
Number of extensions: 65815
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)