Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_G11
(880 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 232 3e-61
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 34 0.17
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 5.0
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 29 5.0
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 5.0
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1) 29 6.6
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 29 6.6
SB_57025| Best HMM Match : Fascin (HMM E-Value=0) 29 6.6
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 8.7
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46) 28 8.7
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 232 bits (567), Expect = 3e-61
Identities = 108/151 (71%), Positives = 128/151 (84%)
Frame = +2
Query: 152 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 331
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60
Query: 332 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 511
LPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61 LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120
Query: 512 QALSIPTKISKGTIEIINDVHILKPGDKVGA 604
QAL+IPTKI++GTIEIINDVH++K +K+ A
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.075
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 266 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 382
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -1
Query: 568 IVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGNDD*QWG 446
I+D NS + R K+LEERGLL+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 407 ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 580
E ++ +PA +P S+ TGL P S Q LS+ T + ++ D+
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128
Query: 581 KPGDK 595
PG K
Sbjct: 2129 TPGKK 2133
>SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -1
Query: 184 DETFWVLVQELDDLNEV-VRLPSSLVLPTHPG*CGVGTSMKFKDKT-KRTTSVRDKF 20
D+ FW++V+EL+ NE+ + + L G G S + ++K KR ++R++F
Sbjct: 144 DDEFWLIVRELERYNELKAAIRARHGLAPRDEKSGKGPSPEAREKAKKRARTIREEF 200
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 474 WAGMTTDNGAMAPGRAGAWTLFSNSL 397
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 29.1 bits (62), Expect = 5.0
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Frame = -2
Query: 750 PAWNLARRSSGLMSRISGAKIVPESY-TCLTTRPYENGEMFNMLRRVASEAPTLSP---G 583
P+ N S L GA P + T T+ PY + AS +PT+SP
Sbjct: 1193 PSTNNDPVSQPLFITTPGALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTISPIGSS 1252
Query: 582 FKMCTSLMISIVPFEILVGIERAWKKEVFS------GPRPVLWAGMTTDNGAMAP 436
C+++ P +G ERA ++ S G P++ G NG P
Sbjct: 1253 LAQCSTVDSMDKPSLRPIGTERACRRATASPLPSMPGISPLIGGGKLVGNGDSVP 1307
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 166 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDA 282
VPKMFH RG+ T+A P + T +L+ R G++ +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895
>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
Length = 939
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -2
Query: 705 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 532
+S + +VP+SY TRP NG+ + + A E P+L+ F+ L +I + I
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218
Query: 531 VGIERAWK 508
+ AWK
Sbjct: 219 NAFDMAWK 226
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 600 PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 484
P P F+ C +L+ ++ ++ + RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878
>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
Length = 504
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 324 RNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPPTTPALV 491
R CCH ++ S AET+ ++ T L+L+P P P P TT ALV
Sbjct: 148 RQCCHQQADKISRDSEAETATKTET----PPPWLRLLPAPYPRT----PTTTCALV 195
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +2
Query: 494 EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 661
E S Q+ + P T++S G+ + V +KP + G + T ++ N+S S
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328
Query: 662 VKQVYDSGTIFAPEILDI 715
VK ++ S T+ P L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 411 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 301
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
Length = 320
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 596 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 763
+ S + + +L +SP YG+ + +G +F IL + PE + + A VA
Sbjct: 82 IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141
Query: 764 AALSLAI 784
A +LAI
Sbjct: 142 ALTTLAI 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,032,372
Number of Sequences: 59808
Number of extensions: 713625
Number of successful extensions: 1972
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1966
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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