Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_G10
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 62 1e-10
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 30 0.49
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 29 1.1
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 29 1.1
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 3.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 3.4
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c... 26 6.0
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 6.0
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 62.1 bits (144), Expect = 1e-10
Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 5/229 (2%)
Frame = +3
Query: 129 KPNSTITVGR-DSINLNGIEGCRYFSTFKMISKSNKKAREYTVELTDEVVNLKDEIEIKL 305
KPN+TI +G+ S + + G + TF++ KK R V T EV +++E +
Sbjct: 29 KPNNTIHLGKFGSFLADDLFGKHFDETFEIYQP--KKIR---VLKTREVQYIEEEKKTNQ 83
Query: 306 SGSDNRNIVDDGLSQKLTAAEIEDLKNDAN----RASDIIESLITNSNTFHNKTEFSQXX 473
+D R +Q +T EI++L+ + RA + I+ L +S TF KT F+Q
Sbjct: 84 ELNDCRG------NQLMTQEEIDELRANIKAGGLRAEEAIKQLTNSSKTFEQKTLFAQEK 137
Query: 474 XXXXXXXXXXXXXQILKPNLRTIAEIMYKLEPGKVQNLRIDTLSQIITTVNIYCEGNHLL 653
Q+L+P + +A M + +P K+ +L + +S ++T N+ G +L+
Sbjct: 138 YVTRKGEKYLQRFQVLRPCVEVVANYMIEHDPYKILDLTAECISLMLTLGNVKPGGRYLV 197
Query: 654 YDSGSNGLVAAALLSSIGQNTNGRLVHMHPGNMSQKQALLAMNFPEEXL 800
D + + +L+ + + LVH + S +F E+ L
Sbjct: 198 VDE-TGCMFLGSLIDRVAGDCKITLVHPNEQPNSSCLEYWGQDFKEDSL 245
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.9 bits (64), Expect = 0.49
Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 3/137 (2%)
Frame = +3
Query: 39 KVSKMSDNMIKIGDYIV--IQKQNFKKLHKYNKPNSTITVGRDSINLNGIEGCRYFSTFK 212
+ S S + K + IV + + N K ++ P+ T S NL+ + + ++ +
Sbjct: 502 RTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPS-NLSDTQYKKLYNLYL 560
Query: 213 MISKSNKKAREYTVELTDEVVNLKDEIEIKLS-GSDNRNIVDDGLSQKLTAAEIEDLKND 389
+ K+ + Y + +NL D + + G D ++ LSQ A+ IE + +D
Sbjct: 561 VEFKAGRADVFYIDDNIKLSLNLNDYVVVDADRGQDLGRLIAQNLSQSEVASHIEKIPSD 620
Query: 390 ANRASDIIESLITNSNT 440
N ++ I +T
Sbjct: 621 RNGQLQNLDGAILEGDT 637
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 525 PNLRTIAEIMYKLEPGKVQNLRI 593
PNL+T+ E++YK GKV RI
Sbjct: 147 PNLKTVRELLYKRGFGKVNKQRI 169
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 381 SDLRFLQLSVSVRVHHQRCFYYHYQIILSQSHLLD 277
+D+ FL L+ SVR R F YH + I + +LD
Sbjct: 227 NDIHFLMLNDSVRTEGYRDFVYHNKHIFAGKTVLD 261
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 243 EYTVELTDEVVN-LKDEIEIK-LSGSDNRNIVDDGLSQKLTAAEIEDLKNDANRASD 407
E V+ T+E++ + ++ ++ LSG ++ NI+DDG A E K +AN SD
Sbjct: 127 ESVVKDTEEIIEQAQHDVSLRNLSGIEDENIIDDG-----ETAINEQKKREANVFSD 178
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +3
Query: 342 LSQKLTAAEIEDLKNDANRASDIIESLITN 431
L Q+L + ++ +ND+N ++D++++ +TN
Sbjct: 936 LIQELHSLIVDHFQNDSNSSADLLDAWVTN 965
>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 326
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 339 GLSQKLTAAEIEDLKNDANRASDIIE 416
GLS+KL A ++DL ND +A+ +++
Sbjct: 214 GLSEKLKAYNLQDLGNDTVQANLLLQ 239
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 627 IYCEGNHL-LYDSGSNGLVAA-ALLSSIGQNTNGRLVHMHPGNMS 755
+ CE H LY NG+V A + S ++TNGR +H P ++S
Sbjct: 395 VECEQPHADLYSL--NGVVKAPGAVQSPSESTNGRKIHEEPFSIS 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,731
Number of Sequences: 5004
Number of extensions: 56867
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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