Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_G10
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70... 78 8e-15
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 37 0.024
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 34 0.17
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 32 0.68
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 30 2.7
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 29 3.6
05_07_0192 - 28314224-28316287 29 4.8
06_03_1307 + 29218055-29218159,29218249-29218362,29218448-292186... 28 8.3
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 28 8.3
>04_01_0070 -
706640-706747,707221-707307,707397-707502,707585-707693,
707766-708145,708508-708601,709351-709475,709633-709674,
710822-710892,710979-711060,711157-711277,712404-712713
Length = 544
Score = 78.2 bits (184), Expect = 8e-15
Identities = 42/131 (32%), Positives = 70/131 (53%)
Frame = +3
Query: 315 DNRNIVDDGLSQKLTAAEIEDLKNDANRASDIIESLITNSNTFHNKTEFSQXXXXXXXXX 494
DNR++VD+ +Q L++ +IE +K D +I+E+LI NS+TF KT FSQ
Sbjct: 121 DNRSLVDNNTAQNLSSDDIEAMKRDGVSGDEIVEALIANSSTFGKKTLFSQEKYKLKKQK 180
Query: 495 XXXXXXQILKPNLRTIAEIMYKLEPGKVQNLRIDTLSQIITTVNIYCEGNHLLYDSGSNG 674
+ +P+ R+I E +K P + +R+D LS +++ N+ + L+ D G
Sbjct: 181 KYAPKVLLRRPSTRSICETYFKKSPARTGFMRVDALSLLLSMANVGPYSDVLVVDM-VGG 239
Query: 675 LVAAALLSSIG 707
LV A+ +G
Sbjct: 240 LVVGAVAERLG 250
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 36.7 bits (81), Expect = 0.024
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +3
Query: 195 YFSTFKMISKSNKKAREYTVELTDEVVNLKDEI-EI----KLSGSDNRNIVDDGLSQKLT 359
YF+ + + + + + TV+ V D+ E+ K S S IVD G+S++
Sbjct: 611 YFARTMLAASKSDTSDKVTVDANQNNVRNDDQFTEVVESEKQSVSQLLQIVDGGMSRESA 670
Query: 360 AAEIEDLKNDANRASDIIESLITNSNTFHN 449
+ +E K D N A DI S NSN N
Sbjct: 671 ISLLEKAKGDVNVAVDIFYSKTDNSNVLEN 700
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 33.9 bits (74), Expect = 0.17
Identities = 25/70 (35%), Positives = 34/70 (48%)
Frame = +3
Query: 258 LTDEVVNLKDEIEIKLSGSDNRNIVDDGLSQKLTAAEIEDLKNDANRASDIIESLITNSN 437
L DEV K++ +D + + L KL AAE EDL ND AS +E+LI N
Sbjct: 386 LEDEVAKQKEDFHTADKEADELRLEIEDLRLKLEAAE-EDLNND-KIASSEMETLIEQKN 443
Query: 438 TFHNKTEFSQ 467
+ E S+
Sbjct: 444 MLAKELEASK 453
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 31.9 bits (69), Expect = 0.68
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +3
Query: 126 NKPNSTITVGRDSINLNGIEGCRYFSTFKMISKSNKKAREYTVELTDEVVNLKDEIEIKL 305
+ P ST G+D + + R FS I + +ELT V + E+K
Sbjct: 56 SSPASTTDAGQDRLQKVPVSNIRNFSIIAHIDHGKSTLADKLLELTGTV----QKREMKQ 111
Query: 306 SGSDNRNIV-DDGLSQKLTAAEIEDLKNDANRASDIIES 419
DN ++ + G++ KL AA + + ND ++I++
Sbjct: 112 QFLDNMDLERERGITIKLQAARMRYIMNDEPYCLNLIDT 150
>12_02_0995 +
25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 29.9 bits (64), Expect = 2.7
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +3
Query: 210 KMISKSNKKAREYTVELTDEVVNLKDEIEIKLSGSDNRNIVDDGLSQKLTAAEIEDLKND 389
K +K K +R+ + +E V++K EI I+ S + I+DD SQ A EI ++
Sbjct: 473 KKQAKQKKNSRKNN-KGKNEKVDIK-EIVIESSSPPDDRILDDLSSQ---AEEITSNADN 527
Query: 390 ANRASDIIESLITNSNTFHNKTEFSQ 467
SDI ++ +S HN E S+
Sbjct: 528 PEEVSDISDNRDDSSELLHNDLEDSE 553
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +3
Query: 183 EGCRYFSTFKMISKSNKKAREYTVELTDEVVNLKDEIEIKLSGSDNRNIVDDGLSQKLTA 362
E R+ KM+ +NK+ +EY L NL + + SG + + + T
Sbjct: 208 EAKRFSEQLKMVQDTNKRLQEYNTSLQQYNSNL--QADASKSGDIISKLQKEKSAMMETM 265
Query: 363 AEIEDLKNDANRASD 407
A ++DL N D
Sbjct: 266 ASLKDLNNSMKNHLD 280
>05_07_0192 - 28314224-28316287
Length = 687
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 663 GSNGLVAAALLSSIGQNTNGRLVHMHPGNMSQKQALLAMNFPEEXLKRCISVNVY--SAL 836
GS +V + ++ ++GQ + V + S K+ +L + LKR + +NVY SAL
Sbjct: 197 GSTSIVRS-MVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSAL 255
Query: 837 RQFYXGCD 860
Y CD
Sbjct: 256 VDMYGKCD 263
>06_03_1307 +
29218055-29218159,29218249-29218362,29218448-29218660,
29218967-29219457,29219653-29219752,29219835-29219894,
29220055-29220147,29220270-29220368,29220484-29220804
Length = 531
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = +3
Query: 24 SMLTGKVSKMSDNMIKIGDYIVIQKQNFKKLHKY 125
S+L G +SK+ D+M+ + + +IQ++N ++L +Y
Sbjct: 82 SILEGTISKLEDDMVSL-HFQLIQERNERRLVEY 114
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +3
Query: 216 ISKSNKKAREYTVELTDEVVNLKDEIEIKLSGSDNRNIVDDGLSQKLTAAEIEDLKNDAN 395
+ KS ++ E + EL+ LK + ++K RNI DD L+ + T E+E L ++
Sbjct: 618 LQKSKERKEEKSAELSKNKELLKSQDQLK------RNI-DDNLNYRRTKDEVERLTHEIE 670
Query: 396 RASDIIESL 422
D I S+
Sbjct: 671 LLEDKILSI 679
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,155,448
Number of Sequences: 37544
Number of extensions: 297415
Number of successful extensions: 658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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