Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_G10
(862 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_44630| Best HMM Match : HECT (HMM E-Value=0) 28 8.5
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 213 MISKSNKKAREYTVELTDEVVNLKDEIE-IKLSGSDNRNIVDDGLSQKLTAAEIE 374
M +S K T ++V L+ E+E +K +G +NRNI D+ +K+ ++E
Sbjct: 397 MRQESEAKLNLTTTNYEEKVTTLEKELEELKRTGINNRNITDNCFWKKVNEEKLE 451
>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 591 IDTLSQIITTVNIYCEGNHLLYDSGSNGLVAAALLSSIGQNTNGRLVHMHPGNMSQKQAL 770
I+T + N+ + L + G++ LL GQNTNG H ++++ +
Sbjct: 51 IETSKSLSHDSNLDIVLHDLTTEGQQYGIILQQLLELHGQNTNGE--RGHEVQLTEENEI 108
Query: 771 LAMNFPE-EXLKRCISV 818
L + F E E LK ISV
Sbjct: 109 LKLAFKEIERLKYMISV 125
>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Frame = +3
Query: 240 REYT-VELTDEVVNLKDEIEIKLSG----SDNRNIVDDGLSQ----KLTAAEIE-DLKND 389
++YT E+T V + + EI K +G NR +D G+ Q KLT E E ++K D
Sbjct: 68 KDYTDEEVTQLVEDARKEIPGKENGRVEDETNRYSLDSGIGQLSDSKLTENEEESEMKED 127
Query: 390 ANRASDIIES 419
N+ D+I++
Sbjct: 128 GNKVKDVIDN 137
>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 216 ISKSNKKAREYTVELTDEVVNLKDEIEIKLSGSDNRNIVDDGLSQKLTAAEIEDLKNDAN 395
+S+ K A+ + + E+ + E++ + +D ++ +D+ L KLT EI +L+N N
Sbjct: 770 VSQELKNAQAHIAQKQKELQTCERISELEENKADTKSKMDERL--KLTENEISNLRNMLN 827
Query: 396 RASDIIESL-ITNSN 437
+ + SL + N N
Sbjct: 828 EKTSELSSLRLENGN 842
Score = 28.7 bits (61), Expect = 6.4
Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Frame = +3
Query: 99 QNFKKLHKYNKPNSTITVGRDSINLNGIEGCRYFSTFKMIS-----KSNKKAR-EYTVEL 260
Q +K+H + NS ++ + + + + T + IS K++ K++ + ++L
Sbjct: 755 QQLRKIHDLERENSRVSQELKNAQAHIAQKQKELQTCERISELEENKADTKSKMDERLKL 814
Query: 261 TD-EVVNLKDEIEIKLSGSDNRNIVDDGLSQKLTAAE--IEDLKNDANRASDIIESLITN 431
T+ E+ NL++ + K S + + + L QK+ AE I +L N+ + + +S +
Sbjct: 815 TENEISNLRNMLNEKTSELSSLRLENGNLEQKMRDAEMKIHELNNNIKNEA-LYQSTMAR 873
Query: 432 SNT 440
+T
Sbjct: 874 KDT 876
>SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +3
Query: 219 SKSNKKAREYTVELTDEVVNLKDEIEIKLSGSDNRNIVDDGLSQKLTAAEIEDLKNDANR 398
+K +K + V+ +DE ++++E K +G D + D + +K + DL++D
Sbjct: 23 NKDDKAGKGEDVKASDEEAGEEEDVEAKDNGEDGAS--DTIVKEKKPCKSLSDLQDDREN 80
Query: 399 ASDII 413
+ I+
Sbjct: 81 SGTIL 85
>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
Length = 1003
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/85 (25%), Positives = 33/85 (38%)
Frame = +3
Query: 603 SQIITTVNIYCEGNHLLYDSGSNGLVAAALLSSIGQNTNGRLVHMHPGNMSQKQALLAMN 782
SQ+ V+ +GN + + + LV A L SI V N+S +
Sbjct: 269 SQLRDIVSGQFDGNVRSFHASKDSLVTAQDLGSISVFRRNSDVTSSKHNLSGNLVTNLTD 328
Query: 783 FPEEXLKRCISVNVYSALRQFYXGC 857
P E L S+N +S + F C
Sbjct: 329 IPPELLASTSSLNEFSTIEDFEKEC 353
>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +3
Query: 210 KMISKSNKKAREYTVELTDEVVNLKDEIEIKLSGSDNRNIVDDGLSQKLTAAEIEDLKND 389
K+ + N++ + D V LKD +++ + L +K+T E+ + ND
Sbjct: 906 KLEADMNEQQASKDITAQDRVSELKDLLKVSRESESKLQERIESLREKITGLELAAI-ND 964
Query: 390 ANRASDIIESLI 425
A + + +ES +
Sbjct: 965 ATASKEELESAV 976
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,795,512
Number of Sequences: 59808
Number of extensions: 365406
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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