Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G09
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               176   2e-44
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                80   3e-15
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                55   6e-08
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  31   1.6  
SB_2865| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.6  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         30   2.1  
SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2)                      29   6.4  
SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)                 29   6.4  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)                   29   6.4  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  176 bits (428), Expect = 2e-44
 Identities = 76/130 (58%), Positives = 99/130 (76%)
 Frame = +1

Query: 178 EKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDL 357
           E  P  ++G ++GL  G HGFH+H +GDNTNGC SAG HFNP K++HGGPS   RHVGDL
Sbjct: 24  EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDL 83

Query: 358 GNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGR 537
           GN+ A  D G   + + D+ ++L G +S++GR++VVHAD DDLG GGHE SKTTG+AGGR
Sbjct: 84  GNVVA-GDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGR 142

Query: 538 IACGVIGLAK 567
           +ACGVIG+ +
Sbjct: 143 LACGVIGITQ 152


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 39/71 (54%), Positives = 49/71 (69%)
 Frame = +1

Query: 343 HVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTG 522
           HVGDLGNI A ++   T    +D  + +     IIGR +VVHAD DDLG GGHELSK+TG
Sbjct: 1   HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 523 NAGGRIACGVI 555
           N+G R+ CG+I
Sbjct: 57  NSGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 28/49 (57%), Positives = 34/49 (69%)
 Frame = +1

Query: 316 HGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLV 462
           HG P    RH+GDLGNIEA + +G+  VSI D  +SL G  SIIGR+LV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 24/93 (25%), Positives = 43/93 (46%)
 Frame = +1

Query: 232 HGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQD 411
           H  H++    + + C +  +  +  +  HGG  S++     +GN  +    G    S+ D
Sbjct: 309 HDNHLNPSSYDNHSCLANQSSLSDNQSSHGGNHSSL-----VGNQSS---HGGNHSSLDD 360

Query: 412 SQISLHGPNSIIGRTLVVHADPDDLGLGGHELS 510
           +Q SL G  SI+G     H + +  GLG ++ S
Sbjct: 361 NQSSLGGNQSILGDNQSSHGN-EKSGLGDNQSS 392


>SB_2865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 28/104 (26%), Positives = 52/104 (50%)
 Frame = +2

Query: 233 TVSMCTNLVTTQMVAHQLELISTLKNKIMVVPVLLYAMSATSVTLRQLKTLESLKYQSKI 412
           TV M T L+T  MV   + ++  L   +MV  V +  ++   VTL  + T++ +      
Sbjct: 27  TVMMVT-LITVMMVTLVMVIMVKLVTVMMVTLVTVVMVTVMMVTLVMVITVKLVTVMMVT 85

Query: 413 LRSLFMDLTASLVAL*LSMLTLMTWDSVAMS*VRPLVMLVAVLL 544
           L ++ M     +  + + M+TL+T   V +  V+ +V LV V++
Sbjct: 86  LVTVVMVTVMMVTLVTVMMVTLVTVMMVTLVTVK-MVTLVMVMI 128


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
 Frame = +1

Query: 73  CYTLNIT*YNITMPAKAVCVLRGDVSGTVFFDQQDEKSP----VVVSGEVQGLTKGKHGF 240
           C  L  T  ++             + GTV F Q    +     + ++G  + L+   H  
Sbjct: 42  CVNLRFTACHVNGTTLKATFSMSGIRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDL 101

Query: 241 HVHEFGDNTNGCTSA--GAHFNPEKQDHGGPSSAVRH---VGDL-GNIEAIEDSGVTKVS 402
            V   G+    C +   G  ++P+       S+A +    VGDL G    I+ + ++ V 
Sbjct: 102 PVIYKGNAATTCNTVALGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV- 160

Query: 403 IQDSQISLHGPNSIIGRTLVV 465
             DS + L G + I GRTLV+
Sbjct: 161 FHDSNLPLTGRHGIFGRTLVL 181


>SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2)
          Length = 259

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 224 RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 397
           R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 125 RIQKASHALGKLRTKVLQHQDIHLSTKLKVYNAVVLPSLLYGCETWTLYCRHIKKLE--R 182

Query: 398 YQSKILRSL 424
           + ++ LR++
Sbjct: 183 FHTRSLRAI 191


>SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
          Length = 401

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +2

Query: 224 RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 397
           R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE   
Sbjct: 180 RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYRRHIKKLEQFH 239

Query: 398 YQS--KILRSLFMDLTASLVAL 457
            +S   I+R  + D   +L  L
Sbjct: 240 TRSLRAIMRIRWQDRITNLEVL 261


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 224  RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 397
            R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 3174 RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYCRHIKKLE--R 3231

Query: 398  YQSKILRSL 424
            + ++ LR++
Sbjct: 3232 FHTRSLRAI 3240


>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
          Length = 1195

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 224  RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 397
            R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 944  RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYCRHIKKLE--R 1001

Query: 398  YQSKILRSL 424
            + ++ LR++
Sbjct: 1002 FHTRSLRAI 1010


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,106,514
Number of Sequences: 59808
Number of extensions: 519409
Number of successful extensions: 1175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)