Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G07
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)                29   6.0  
SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)                  29   6.0  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       28   7.9  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            24   9.0  

>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
          Length = 641

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 625 TLATTTIQFLVKVVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHHLRALN 774
           T++      ++ +VI+QHHH     N HH   + +  +H    HH +  N
Sbjct: 553 TISIINSMIIINIVINQHHH-QKQQNQHHRHHQKQQNQH--HRHHQKKQN 599


>SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)
          Length = 272

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 123 FTRKQFYVPFILVFKILNAQKTSKLDSQQILFITSKRKYLSWQSI 257
           F   +F+  F+L  ++L A    ++  ++ + +   RKY SW +I
Sbjct: 227 FGNVKFFNRFLLKDRVLEAFPKVRISDRRTVIVIKGRKYRSWNAI 271


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 643  IQFLVKVVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 759
            I  ++ +  H HHH     ++HH QQ      H   HHH
Sbjct: 1022 ITIIITIFNHYHHHRRRHHHYHHQQQ------HQFHHHH 1054


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 24.2 bits (50), Expect(2) = 9.0
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 607 VICHGSTLATTTIQFLVKVVIHQHHH 684
           +I H     +++   ++ ++IH HHH
Sbjct: 292 IIIHHHHHPSSSSSIIIIIIIHHHHH 317



 Score = 22.2 bits (45), Expect(2) = 9.0
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 661 VVIHQHHHFWT*AN-FHH*QQEARVTKHP 744
           ++IH HHH  + ++  HH      +  HP
Sbjct: 326 IIIHHHHHPSSSSSIIHHHPSSIIIHHHP 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,319,485
Number of Sequences: 59808
Number of extensions: 440216
Number of successful extensions: 984
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)