Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G07
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr...    28   9.2  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    28   9.2  

>AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical
           protein T11F8.1 protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 212 LVYYIEAEIFILA-EYTRL*TILILYKIVEQGLIIGYGK 325
           ++ + E E+F L+ E+ R    LI++ I+  GL+IG+ K
Sbjct: 23  VILFYEYEVFDLSDEWHRFNLYLIIFTIMVLGLLIGFAK 61


>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical protein
            C03D6.4 protein.
          Length = 1390

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 438  FGGALSPGRNSTAMPGGAPPSMASRATLFGQRAFAD 545
            FGG  +P  N++   GGA  + A  +++FG  A A+
Sbjct: 1344 FGGGATPQTNTSIFGGGANTTPAPTSSVFGGGASAN 1379


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 426 VTPTFGGALSPGRNSTAMPGGAPP 497
           V P   GA  PG+    MPG  PP
Sbjct: 277 VAPGMPGAFPPGQGGPGMPGSFPP 300


>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.4 protein.
          Length = 1913

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 674 NTTTSGPKRISITNSKRRG*PSTHYSTT 757
           +T+  GP  +SI N   RG P++  STT
Sbjct: 4   HTSQPGPSHVSIVNVPERGGPTSSTSTT 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,269,221
Number of Sequences: 27780
Number of extensions: 340434
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)