Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G04
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   4.3  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   5.7  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   10.0 

>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 242  SFGAFRYPRGVYTS*EASWEMLSLLSGSYKQKTTTKRLE 358
            SFG F    GVY     S      + G +K++ TT++LE
Sbjct: 951  SFGIFCLIAGVYYILSESSSFDRWMHGKHKERGTTRKLE 989


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 239 ISFGAFRYPRGVYTS*EASW-EMLSLLSGSYKQKTTTKRLELYNHLRYSHDNFDLTS 406
           I+FG  R+P+GV +S   S+   L   + +++        EL  H  ++  N+DL S
Sbjct: 516 IAFGKVRFPKGVLSSEGRSFVRGLLNRNPNHRLGAVADTTELKEHPFFADINWDLLS 572


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 163 IEETTMSVIIRLQNLPWSANALDIRNFFRGLSIPEGGV 276
           I+E   S+ +   NLP ++N        +GLSIP G +
Sbjct: 495 IKEPASSMTLLASNLPKASNFYISYFLLQGLSIPGGAL 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,542
Number of Sequences: 5004
Number of extensions: 36738
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)