Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G04
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0197 + 1554449-1555101,1555462-1555558                           34   0.088

>11_01_0197 + 1554449-1555101,1555462-1555558
          Length = 249

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 187 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV----GGELGDAFIAF 318
           +++L+ LP+SA   DI  FF    + E  VHI     G   G+AF+ F
Sbjct: 151 VLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEF 198



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 190 IRLQNLPWSANALDIRNFFRGLSIPEG-GVHIVGGELGDAFIAF 318
           +RL+ LP+  + LDI  FF GL I +   VH  G   G+AF+ F
Sbjct: 35  VRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVF 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,517,625
Number of Sequences: 37544
Number of extensions: 225724
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)