Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G04
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.48 
SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   3.4  
SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)                        28   4.5  

>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +1

Query: 178 MSVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGELGDA 306
           M V+I+++ LP+ A + DI+ FF GLS+ E  +H+   + G A
Sbjct: 1   MPVVIKMKGLPFEATSRDIQMFFDGLSLREKDIHLAANKDGKA 43



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 166 EETTMSVIIRLQNLPWSANALDIRNFFRGLSI 261
           ++   S I+R+  LP+ ++  D+  FF GL I
Sbjct: 327 DQEATSTIVRMFGLPFESSKRDLYKFFNGLKI 358



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +1

Query: 187 IIRLQNLPWSANALDIRNFFRGLSI-PEG-GVHIV--GGELGDAFIAF 318
           ++ ++NLP S  A  I +FF G ++ PE   +H +  G   GDA I F
Sbjct: 546 VVGIRNLPSSITADQILDFFYGFNVLPETIKIHYLSPGRSSGDAMITF 593


>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 187 IIRLQNLPWSANALDIRNFFRGLSIP 264
           ++R + LPW A+  D+ NFFRGL+IP
Sbjct: 174 VLRARGLPWQASDQDVANFFRGLNIP 199



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
 Frame = +1

Query: 172 TTMSVIIRLQNLPWSANALDIRNFFRGLSIP----EGGVHIVGGE----LGDAFIAF 318
           T   VIIR++ LP+S  A D+  FF G  +P    EGG+ +V G      GDAF+ F
Sbjct: 320 TNAEVIIRMRGLPFSTKAADVVRFF-GDDVPVYRGEGGILMVRGRNGKATGDAFVLF 375


>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 187 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV----GGELGDAFIAF 318
           +++L+ LP+  +  +I  FF GL I   G+ I     G   G+ F+ F
Sbjct: 39  VVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFVEF 86


>SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 425

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +3

Query: 168 RNNHECHHKTTEPALVGKCSGY*EFLSGPFDTRGGCTHRRRRAGRCFHCFQV 323
           RN HE  H   +P     C     F       R   TH + ++ RC HC QV
Sbjct: 360 RNKHELSHSREKPFNCKYCDR--SFSQSSTVLRHMRTHDKDKSYRCVHCGQV 409


>SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)
          Length = 356

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 273 TPLGYR-KAPKEIPNIQSICRPRQVL*SYDDTHGCFFYCLYTRT*CPPSRLQNEKHCKNT 97
           TP+ Y  K PKE P   ++  PRQ       ++G F Y        PP +   ++   N 
Sbjct: 44  TPVLYSCKTPKESPQSATLATPRQ------KSNGAFGYKKTFNQAAPPYQKALDESGYNY 97

Query: 96  TVHRKISITHRR 61
           T+H + + T++R
Sbjct: 98  TLHYEPNTTNKR 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,645,083
Number of Sequences: 59808
Number of extensions: 266815
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)