Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_G04
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 69 2e-12
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 38 0.006
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 33 0.14
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 33 0.14
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 28 5.2
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 28 5.2
L23651-4|AAU87828.2| 294|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81545-3|CAB04447.1| 178|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 68.9 bits (161), Expect = 2e-12
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +1
Query: 178 MSVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGELGDAFIAF 318
MSVIIRL+NLP +A A D+R FF GL IP+G VHI+GG+ G+ F+ F
Sbjct: 1 MSVIIRLKNLPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVGF 47
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 187 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGELG 300
+IRL+ +PWS D+R FF GL P + ++GG G
Sbjct: 158 VIRLRGVPWSCKEDDVRKFFEGLEPPPAEI-VIGGTGG 194
Score = 34.3 bits (75), Expect = 0.060
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 169 ETTMSVIIRLQNLPWSANALDIRNFFRGLSIPE-GGVHIVGGELGDAFIAFR 321
E S IRL+ LP++A DI FF GL+I V G G+A++ F+
Sbjct: 59 EPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFK 110
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 181 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGV 276
+V+ R + LPW A+ + FF GL I GG+
Sbjct: 180 NVVCRARGLPWQASDHHVAQFFAGLDIVPGGI 211
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 181 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV---GGELGDAFIAF 318
++I+R++ LP+ IR FF L + + + I G GDAF+ F
Sbjct: 280 AIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQF 328
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 181 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGV 276
+V+ R + LPW A+ + FF GL I GG+
Sbjct: 180 NVVCRARGLPWQASDHHVAQFFAGLDIVPGGI 211
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 181 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV---GGELGDAFIAF 318
++I+R++ LP+ IR FF L + + + I G GDAF+ F
Sbjct: 280 AIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQF 328
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 181 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGV 276
+V+ R + LPW A+ + FF GL I GG+
Sbjct: 180 NVVCRARGLPWQASDHHVAQFFAGLDIVPGGI 211
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 181 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV---GGELGDAFIAF 318
++I+R++ LP+ IR FF L + + + I G GDAF+ F
Sbjct: 280 AIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQF 328
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 187 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGEL----GDAFIAF 318
I+RL+ LP+S + DI +F L I G+ + + G+A++ F
Sbjct: 124 IVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCF 171
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 187 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGEL----GDAFIAF 318
I+RL+ LP+S + DI +F L I G+ + + G+A++ F
Sbjct: 124 IVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCF 171
>L23651-4|AAU87828.2| 294|Caenorhabditis elegans Hypothetical
protein C29E4.13 protein.
Length = 294
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 273 CTHRRRRAGRCFHC 314
CTH + R RCFHC
Sbjct: 137 CTHLKYRPYRCFHC 150
>Z81545-3|CAB04447.1| 178|Caenorhabditis elegans Hypothetical
protein F49H6.3 protein.
Length = 178
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 156 YTRT*CPPSRLQNEKHCKNTTV 91
Y R C S+L + KHC TT+
Sbjct: 153 YARVECGSSKLHDNKHCHRTTM 174
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical protein
ZC84.6 protein.
Length = 1474
Score = 27.1 bits (57), Expect = 9.1
Identities = 7/36 (19%), Positives = 21/36 (58%)
Frame = -1
Query: 165 YCLYTRT*CPPSRLQNEKHCKNTTVHRKISITHRRL 58
+C+ + CP ++ ++ C + ++ R+I T +++
Sbjct: 1115 HCIAMKCSCPTGTIEQKQQCMDVSIEREIKCTDKQV 1150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,311,942
Number of Sequences: 27780
Number of extensions: 206690
Number of successful extensions: 476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -