Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G03
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    83   4e-17
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    77   3e-15
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.7  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   6.1  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 83.4 bits (197), Expect = 4e-17
 Identities = 42/74 (56%), Positives = 49/74 (66%)
 Frame = +2

Query: 659 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPXRNRMDAYNII 838
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 839 KFPLTSEAAMXKIE 880
             P+ SE+AM KIE
Sbjct: 63  VNPINSESAMKKIE 76


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 77.4 bits (182), Expect = 3e-15
 Identities = 39/74 (52%), Positives = 47/74 (63%)
 Frame = +2

Query: 659 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPXRNRMDAYNII 838
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 839 KFPLTSEAAMXKIE 880
             P+ SE+AM KIE
Sbjct: 63  VNPINSESAMKKIE 76


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -1

Query: 814 ISXRQRLPWVFRVPRRFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFHYFFLS 635
           +S R   P  F    RF+ L S++   + + PY+ P   F     S +    + H    S
Sbjct: 201 VSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMHRRTKS 260

Query: 634 LNPSL 620
             PSL
Sbjct: 261 ATPSL 265


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 559 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 648
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,679
Number of Sequences: 5004
Number of extensions: 31129
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)