Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_G03
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 83 3e-16
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 79 5e-15
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 30 2.5
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 30 2.5
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 30 2.5
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 30 2.5
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 29 5.8
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 29 5.8
AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical ... 29 5.8
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/72 (52%), Positives = 52/72 (72%)
Frame = +2
Query: 665 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPXRNRMDAYNIIKF 844
KAL A++KVVKG+ R++R SVHFRRP T + R ++PRKS P ++MD + II+
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70
Query: 845 PLTSEAAMXKIE 880
PLT+E+AM KIE
Sbjct: 71 PLTTESAMKKIE 82
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 78.6 bits (185), Expect = 5e-15
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +2
Query: 659 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPXRNRMDAYNII 838
V KA++A++ VVKG + +R SVHFRRPKT R P+Y RKS P R+++D++ +I
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67
Query: 839 KFPLTSEAAMXKIE 880
K P T+E++M KIE
Sbjct: 68 KAPHTTESSMKKIE 81
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 175 TCVSQNTGTCPESSCACPEISCACPETSCACP 270
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 175 TCVSQNTGTCPESSCACPEISCACPETSCACP 270
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 175 TCVSQNTGTCPESSCACPEISCACPETSCACP 270
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 175 TCVSQNTGTCPESSCACPEISCACPETSCACP 270
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 718 YSLPMFTFYNLPLSLKCFSNRFHYFF 641
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 214 SCACPEISCACPETSCACPES 276
+C E SC+C C+CPES
Sbjct: 99 ACDDSECSCSCSGGECSCPES 119
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 214 SCACPEISCACPETSCACPES 276
+C E SC+C C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245
>AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical
protein Y48G8AR.3 protein.
Length = 112
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 737 VHFRRPKTFEPPRHPKYPRKSLPXRNRMDAYNIIKFPLTSEAAM 868
+ FRR + RH R+++P ++ I KFP SE A+
Sbjct: 1 MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,783
Number of Sequences: 27780
Number of extensions: 186396
Number of successful extensions: 726
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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