Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G02
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    28   1.3  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    28   1.7  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   6.8  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   6.8  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    25   9.0  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   9.0  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   9.0  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   9.0  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 501 GDFERSHSPSVWSEENKRS*SGWGFTAPAQSAQK 602
           GD+ R HSP+ W  E +R  SG  F+     A++
Sbjct: 281 GDYHRFHSPTDWVVERRRHFSGELFSVSPFMARR 314


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 501 GDFERSHSPSVWSEENKRS*SG 566
           GD+ R HSP+ W  E++R  SG
Sbjct: 367 GDYHRFHSPADWVIESRRHFSG 388


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +1

Query: 235 SEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFK 357
           +E  A LL  +G    +DKW    W         PA+  F+
Sbjct: 429 AEPTAQLLPPDGLAWIDDKWSISPWTFTDTFWAQPAKTQFR 469


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 559 KAGGASLLLPKVRKNPLVEIIAVNTGC 639
           K  G S +L ++RK   + I+ V TGC
Sbjct: 375 KVHGQSFMLHQIRKMIALAILVVRTGC 401


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 105 KRPI*KEGEKRPRTD*KGYIRECCTRHSNNICKNMGLCS 221
           +RP+    E  P TD   +   CC +H  + C+  GLC+
Sbjct: 131 QRPV--YAELSPVTD---FREACCRQHETSECQRGGLCN 164


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 352 NDPQPGSLQYMNSTTKVAHPICLLSI 275
           NDP P + +  N    +A PICL  I
Sbjct: 148 NDPTPFNARSANLKNYIAFPICLFVI 173


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 109 VRSKKREKKDPEQIEKVILESVVP 180
           V+  ++EK DP ++ + +LES+ P
Sbjct: 816 VKKNEKEKDDPMRLAQQLLESLAP 839


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 238 EYMAGLLAANGYKLTEDKW 294
           E +AGL A +G K  +DKW
Sbjct: 23  EIVAGLEAVDGQKFFQDKW 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,979
Number of Sequences: 5004
Number of extensions: 71679
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)