Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_G02
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 196 1e-50
11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299 54 2e-07
02_04_0294 - 21658515-21658573,21658642-21659047,21659166-216593... 30 1.8
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 29 3.1
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 29 3.1
11_01_0484 - 3720376-3720671,3721209-3721767,3722209-3722640,372... 28 7.1
08_01_1050 - 10649434-10651917 28 7.1
11_03_0062 - 9491389-9491678,9492868-9492968,9492974-9493079,949... 28 9.4
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 196 bits (479), Expect = 1e-50
Identities = 100/179 (55%), Positives = 124/179 (69%)
Frame = +1
Query: 229 SDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIELGQSRGIHVVVAG 408
SDSEYM+G L+A GY +TE+ A LWL+N+CTVK+P++ I +S +VVAG
Sbjct: 59 SDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKPLVVAG 118
Query: 409 CVPQGAPKSGYLHGLSIVGVQQIDRIVEVVEETLKGHTVRLFGQRKTNGRKAGGASLLLP 588
CVPQG+ L G+S++GVQQIDR+VEVVEETLKGH VRL RKT SL LP
Sbjct: 119 CVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL-SRKTL------PSLDLP 171
Query: 589 KVRKNPLVEIIAVNTGCLNQCTYCKTKHARGELGSYPPEEIVERARQSFTEGVVXIWLT 765
KVRKN +EI+ +N GCL CTYCKTKHARG LGSY E +V+R + +EGV IWL+
Sbjct: 172 KVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLS 230
>11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299
Length = 556
Score = 53.6 bits (123), Expect = 2e-07
Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 27/240 (11%)
Frame = +1
Query: 124 REKKDPEQIEKVILES--VVPGTQTIYVKTWGCAHNNSDSEYMAGLLAANGY-KLTEDKW 294
R + P + LES V IY +T+GC N +D E + ++ GY ++ D
Sbjct: 26 RRRYSPAPLAPSPLESGPVTASKGRIYHETYGCQMNVNDMEIVLSIMKNEGYDEIVPDPE 85
Query: 295 DAQLWLLNSCTVKSPAED--------------HFKNEIELGQSRGIH---VVVAGCVPQG 423
A++ +N+C ++ AE +K + G+SR + + V GC+ +
Sbjct: 86 SAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRQWKANVAAGRSRSLRPPKIAVLGCMAER 145
Query: 424 APKSGYLHGLSIVGV-------QQIDRIVEVVEETLKGHTVRLFGQRKTNGRKAGGASLL 582
K L +V V + + R+++ V+ KG L +T A +
Sbjct: 146 L-KEKILDSDKMVDVVCGPDAYRDLPRLLQEVDYGQKGINT-LLSLEETY------ADIT 197
Query: 583 LPKVRKNPLVEIIAVNTGCLNQCTYCKTKHARGELGSYPPEEIVERARQSFTEGVVXIWL 762
++ N + +++ GC N C++C RG S P IV + + GV + L
Sbjct: 198 PVRISDNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVSSIVREVGELWKAGVKEVML 257
>02_04_0294 -
21658515-21658573,21658642-21659047,21659166-21659307,
21659411-21659626,21659735-21659830,21660180-21660295,
21660501-21660604,21660970-21661067,21661167-21661272,
21661386-21661473
Length = 476
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 672 VLGLAVCALV-QAARVHGYDLD*RIFAHFGQEQ*SP 568
++ + CA+ + R+HGYD+ + AHF +E P
Sbjct: 75 IMDMETCAMAFRILRMHGYDVSSDVLAHFSEESRFP 110
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 679 GELGSYPPEEIVERARQSFTEGVVXIW 759
G G+ PP+E+VER + EG +W
Sbjct: 15 GRWGAAPPQELVERLKDYGQEGAFALW 41
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 397 VVAGCVPQGAPKSGYLHGLSIVGVQQIDRIVEVVEETLKGHTVRLFGQR 543
V+ G GA G+ VG+QQ + + ++ L G+ V LFG++
Sbjct: 510 VMVGSPDSGAYMERRTFGIQTVGIQQGQQPMHLLNNDLWGYQVGLFGEK 558
>11_01_0484 -
3720376-3720671,3721209-3721767,3722209-3722640,
3723126-3723485
Length = 548
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 292 WDAQLWLLNSCTVKSPAEDHFKNEIELGQSR 384
W LWLL + +K+ K IEL +SR
Sbjct: 449 WPVLLWLLTAACIKTGRPQMAKRAIELAESR 479
>08_01_1050 - 10649434-10651917
Length = 827
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = +1
Query: 268 GYKLTEDKWDAQLWLLNS-------CTVKSPAEDHFKNEIELGQSRGIHVVVAGCVPQ 420
G + TED W W N+ T + A F+++I LG +R + + GC+PQ
Sbjct: 609 GVQTTED-WSTDTWEDNNGGVATENITPEGTATWMFRHKIALGAARALAFLHHGCIPQ 665
>11_03_0062 -
9491389-9491678,9492868-9492968,9492974-9493079,
9493221-9493324,9494887-9495191
Length = 301
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 760 AIXPQLPR*TTVVLSPRSLPEGS-CPALLWRAWSCSMCT 647
AI R T++ L P SL +GS C LL R W C+ T
Sbjct: 232 AIFQSETRTTSIYLYPMSLSQGSECQKLL-RQWQCAKLT 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,754,655
Number of Sequences: 37544
Number of extensions: 518703
Number of successful extensions: 1471
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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