Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G02
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40| Best HMM Match : No HMM Matches (HMM E-Value=.)                172   2e-43
SB_57790| Best HMM Match : UPF0004 (HMM E-Value=5.6e-31)               51   9e-07
SB_17134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_36734| Best HMM Match : SH2 (HMM E-Value=0.00043)                   28   9.5  
SB_5741| Best HMM Match : Peptidase_C53 (HMM E-Value=4)                28   9.5  

>SB_40| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score =  172 bits (419), Expect = 2e-43
 Identities = 80/134 (59%), Positives = 104/134 (77%), Gaps = 2/134 (1%)
 Frame = +1

Query: 70  TPKERYASRKNVSVRSKKREKKD--PEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEY 243
           TP  R  +RK+V  +S+K  KKD   E+ E  + +S++PGTQTIYV+TWGC+HNNSDSEY
Sbjct: 21  TPVSRTNARKDVLPKSRKLAKKDRVKEEKEVPVGDSIIPGTQTIYVRTWGCSHNNSDSEY 80

Query: 244 MAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIELGQSRGIHVVVAGCVPQG 423
           MAG LAA GYK+T+D+  A LWLLNSCTVKSPAED F+N I+  +++G H+VVAGCVPQG
Sbjct: 81  MAGQLAAYGYKITDDEQCADLWLLNSCTVKSPAEDGFRNAIKKAKAQGKHLVVAGCVPQG 140

Query: 424 APKSGYLHGLSIVG 465
            P+   + G+S+VG
Sbjct: 141 QPRHDTVKGISVVG 154


>SB_57790| Best HMM Match : UPF0004 (HMM E-Value=5.6e-31)
          Length = 206

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 4/191 (2%)
 Frame = +1

Query: 205 TWGCAHNNSDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIELGQSR 384
           T GC  N S++  +A      G++  + +  A ++++N+C+V   A+  FK  ++     
Sbjct: 11  TLGCKLNFSETSTIARNFQDEGFERVDFEEVADMYVINTCSVTENADKQFKQIVKKAMKL 70

Query: 385 GIHVVVA--GCVPQGAPKS-GYLHGLSIV-GVQQIDRIVEVVEETLKGHTVRLFGQRKTN 552
                VA  GC  Q  P+    + G+ +V G  +  +I + + +  K     +      +
Sbjct: 71  NDKAFVAAVGCYAQLKPEELAAVDGVDLVLGATEKFKITDYINDLAKNDMGEVHSCEIED 130

Query: 553 GRKAGGASLLLPKVRKNPLVEIIAVNTGCLNQCTYCKTKHARGELGSYPPEEIVERARQS 732
                G+  +  + R       + V  GC  +CTYC    ARG   S   E +++ A++ 
Sbjct: 131 ADFYVGSYSIGDRTRA-----FLKVQDGCDYKCTYCTIPLARGISRSDTMEGVLKNAKEI 185

Query: 733 FTEGVVXIWLT 765
             +G+  I LT
Sbjct: 186 SEKGIKEIVLT 196


>SB_17134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 259 PAVRPCTLNLSCYEHSPMFLHILFECLVQH 170
           P   P       Y HSP FL ++FE L  H
Sbjct: 29  PETTPTFPEQKLYRHSPKFLQVVFETLFVH 58


>SB_36734| Best HMM Match : SH2 (HMM E-Value=0.00043)
          Length = 661

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 413 YRRAHQKVATYMDSV*LVYNRL----TELWRSWRRL*KVTQSVCLVRGKQTVV 559
           YRR +Q++ TY       Y RL    T   R ++RL  VT S C  RG + +V
Sbjct: 209 YRRGYQRLVTYSTCYKRGYKRLVTSSTCYKRGYKRL--VTYSTCYKRGYKRLV 259


>SB_5741| Best HMM Match : Peptidase_C53 (HMM E-Value=4)
          Length = 203

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 424 APKSGYLHGLSIVGVQQIDRIVEVVEETLKGHTVRLFGQRKTNGRKAGGASLLLPKVRKN 603
           AP  G   GL+  G+ ++DR VE    T+ G  V +       GR+A  A     K+ ++
Sbjct: 124 APPKG--EGLTKAGLGRLDRSVEAFVYTVLGAQVNVRSSIAGAGRQAMDAQAEFTKLLED 181

Query: 604 PLVE 615
            ++E
Sbjct: 182 AIIE 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,016,427
Number of Sequences: 59808
Number of extensions: 596001
Number of successful extensions: 1588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)