Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G02
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-1|AAM81103.2|  425|Caenorhabditis elegans Hypothetical ...   140   1e-33
AC084268-3|AAK19005.5|  397|Caenorhabditis elegans Hypothetical ...    63   2e-10
U23172-3|AAC46526.1|  547|Caenorhabditis elegans Hypothetical pr...    61   7e-10
Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z80217-8|CAB02294.1|  207|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat debr...    28   6.3  
AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat debran...    28   6.3  
U13643-3|AAA21086.3|  394|Caenorhabditis elegans Brca homolog (t...    28   8.4  
AY523518-1|AAR98640.1|  394|Caenorhabditis elegans potential BRC...    28   8.4  

>AC084268-1|AAM81103.2|  425|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.1 protein.
          Length = 425

 Score =  140 bits (338), Expect = 1e-33
 Identities = 70/123 (56%), Positives = 91/123 (73%), Gaps = 1/123 (0%)
 Frame = +1

Query: 400 VAGCVPQGAPKSGYLHGLSIVGVQQIDRIVEVVEETLKGHTVRLFGQRKTNGRKAGGASL 579
           +AGCV Q AP   +L  +SIVGV+QIDRIVEVV ETLKG+ VRL  + + +      A L
Sbjct: 1   MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPD------AVL 54

Query: 580 LLPKVRKNPLVEIIAVNTGCLNQCTYCKTKHARGELGSYPPEEIVERARQSF-TEGVVXI 756
            LPK+RKN L+E+++++TGCLN CTYCKTK ARG+L SYP  ++VE+AR +F  EGV  +
Sbjct: 55  SLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKEL 114

Query: 757 WLT 765
           WLT
Sbjct: 115 WLT 117


>AC084268-3|AAK19005.5|  397|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.4 protein.
          Length = 397

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 27/62 (43%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = +1

Query: 103 VSVRSKKREKKDPEQIEKVILESVVPGT-QTIYVKTWGCAHNNSDSEYMAGLLAANGYKL 279
           + +R++K+  K+ +Q +   ++S+VPG  Q ++V+TWGC+HN SDSEYM+GLL   GY +
Sbjct: 20  IKIRTRKQVPKE-QQPDDANVDSMVPGVGQKVWVRTWGCSHNTSDSEYMSGLLQQAGYDV 78

Query: 280 TE 285
            +
Sbjct: 79  VK 80


>U23172-3|AAC46526.1|  547|Caenorhabditis elegans Hypothetical
           protein F25B5.5 protein.
          Length = 547

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 11/203 (5%)
 Frame = +1

Query: 187 QTIYVKTWGCAHNNSDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEI 366
           +T+   T+GC  N SD E +  ++   G+  ++ K +A + LL +C+++  AE    N++
Sbjct: 79  RTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQL 138

Query: 367 ELGQSRGIH----VVVAGCVPQGAPKSGYLHGLSIVGV-------QQIDRIVEVVEETLK 513
           +L +S  ++    V V GC+ +   +   L   ++V +       + + R+V V      
Sbjct: 139 KLIRSNSVNKGQIVGVLGCMAERV-RHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSN 197

Query: 514 GHTVRLFGQRKTNGRKAGGASLLLPKVRKNPLVEIIAVNTGCLNQCTYCKTKHARGELGS 693
           G  V+L      +   A    + +    K   + I+    GC N CTYC     RG   S
Sbjct: 198 GINVQL----SLDETYADVQPIRVDSASKTAFISIM---RGCDNMCTYCVVPFTRGRERS 250

Query: 694 YPPEEIVERARQSFTEGVVXIWL 762
            P E IVE  ++   +G   + L
Sbjct: 251 RPIESIVEEVQRLRDQGYKQVTL 273


>Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical
           protein T24D1.2 protein.
          Length = 464

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 580 AVKPHPLYDRLFSSDQTDGLCDLSKSPPRPPQFCQSVVHQL 458
           A KP     +L   D T G C +  +PP  PQ C+  +  L
Sbjct: 354 AAKPVSAGGKLVEPDSTWGDCTMCSNPPIKPQGCKKCLQFL 394


>Z80217-8|CAB02294.1|  207|Caenorhabditis elegans Hypothetical
           protein F37B1.8 protein.
          Length = 207

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 121 KREKKDPEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEYMAG 252
           KR  K  E++ KV+ ESVVP  ++ Y K        S S ++ G
Sbjct: 109 KRGGKSEEEVAKVVSESVVPAMES-YFKLLNGLLERSKSGFLIG 151


>U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat
           debranching enzyme protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 115 SKKREKKDPEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEY--MAGLLAANGYK 276
           S +   +DP     V+ + V  G + I +   GC+H   D+ Y  M  +   NGYK
Sbjct: 15  SHEGSHQDPAPETLVVEKEVNNGEKKIRIAVVGCSHGEMDAIYETMTLIEQKNGYK 70


>AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat
           debranching enzyme relatedprotein 1 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 115 SKKREKKDPEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEY--MAGLLAANGYK 276
           S +   +DP     V+ + V  G + I +   GC+H   D+ Y  M  +   NGYK
Sbjct: 15  SHEGSHQDPAPETLVVEKEVNNGEKKIRIAVVGCSHGEMDAIYETMTLIEQKNGYK 70


>U13643-3|AAA21086.3|  394|Caenorhabditis elegans Brca homolog
           (tumor suppressorgene brca1) protein 2 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 643 NQCTYCKTKHARGELGSYPPEEIVERARQSF 735
           NQC +CK    + EL  Y    +++ + Q F
Sbjct: 280 NQCEFCKDSQGKSELSMYSRVRVMDFSGQMF 310


>AY523518-1|AAR98640.1|  394|Caenorhabditis elegans potential
           BRCA2-like protein (44.7kD) (3H990) protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 643 NQCTYCKTKHARGELGSYPPEEIVERARQSF 735
           NQC +CK    + EL  Y    +++ + Q F
Sbjct: 280 NQCEFCKDSQGKSELSMYSRVRVMDFSGQMF 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,837,492
Number of Sequences: 27780
Number of extensions: 430020
Number of successful extensions: 1242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)