Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_G01
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 55 1e-08
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 43 5e-05
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 42 2e-04
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 38 0.002
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 36 0.008
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 32 0.12
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 31 0.16
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 28 1.5
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 2.6
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 2.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 4.6
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 6.1
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 55.2 bits (127), Expect = 1e-08
Identities = 32/113 (28%), Positives = 53/113 (46%)
Frame = +1
Query: 496 RRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTLHYLDEWTKPE 675
RR LK L NQ+ E KD ++ ++A E+ + + TL ++ +P
Sbjct: 49 RRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPT 108
Query: 676 HPPKGFVNILDEVVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVK 834
P + + +P GV+ + +WNYPL L P+ A+ AGN ++VK
Sbjct: 109 KRPNSLLTSYKGGYVKYEPLGVIAALVSWNYPLHNALGPIISALFAGNAIVVK 161
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 43.2 bits (97), Expect = 5e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 730 PYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKP 837
P GV+ VI WN+PL++ L + AIA+GN V++KP
Sbjct: 162 PRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKP 197
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 41.5 bits (93), Expect = 2e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 697 NILDEVVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKP 837
N + ++ P GVV +I WN+P ++ + A+AAG TV+++P
Sbjct: 148 NPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRP 194
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 730 PYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPXRT 846
P GV I WNYPL + +A A+AAGN +I+K T
Sbjct: 154 PIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAET 192
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 724 NDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPXRTISRLLELC 870
++P GV I WN+P + +A A+A GNT+I+K ++ L LC
Sbjct: 158 HEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAE-LTPLSALC 205
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 31.9 bits (69), Expect = 0.12
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Frame = +1
Query: 439 AVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDY 618
AVQK + R P+ RQ +NL + ++N + + + KDL + ++ + + V
Sbjct: 9 AVQKRKKQKQRSVVDPVTRERQLKRNLADLEKDNFSDIRFEIPKDLLQRRV--LPISVRR 66
Query: 619 LINDLRNTLHYLDEW---------TKPEH-PPKGFVNI 702
+++ + ++YLDE KP + PP+ F N+
Sbjct: 67 ILSSRKTFVNYLDETPNSRYNTCVAKPSYKPPRKFCNV 104
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 712 VVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKP 837
++ P GV +I WN+P ++ A+AAG T I P
Sbjct: 148 LISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLP 189
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 514 NLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTL 645
+LL++Y + +E + KDL RS E + + IN LRN L
Sbjct: 249 HLLKVYSGQTSFSLEEIEKDLGRSLPEYPAYQNEEGINALRNVL 292
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 846 SSXGFHDNRVPGSDGSGHRQKQQLQGIVPGAYYEDHA 736
S GFH RVP SD +G +Q+QQ + V A+ + A
Sbjct: 561 SKNGFHVVRVP-SDAAGFQQRQQQEEGVLEAHTNESA 596
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 377 NSR*QSGILQHPNKRRCQLLRPSKKLETLSIAAQPGR*NGAVSSSRI 517
N SG+LQ +KR P K ++ S QP R +GA S++ +
Sbjct: 133 NETSSSGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASL 179
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 406 TSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNL 519
TSK T SAA+ K + + T++PI +++ L
Sbjct: 202 TSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPEL 239
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 782 SSCKG*FQAPITRTTPYGSLYITTSSRMFTK 690
S K F+ I +TTPYGS T S ++ TK
Sbjct: 220 SKLKNNFRGIIYKTTPYGSCNDTESLQVDTK 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,230
Number of Sequences: 5004
Number of extensions: 70318
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -