Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_G01
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    26   0.52 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   3.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 846 SSXGFHDNRVPGSDGSGHRQKQQLQGI 766
           S  G H N  P S  SG +Q+  LQG+
Sbjct: 809 SHHGLHINSSPSSVQSGQQQQSVLQGL 835


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 456 RHFQSRHNQADRM 494
           RHFQ +H Q+D +
Sbjct: 23  RHFQDKHEQSDTL 35


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 441 RPKSSRHFQSRHNQADRMAPSAAQESVKNV*GKPK 545
           RPK  +    +  Q D  AP+A +  V+ V  KP+
Sbjct: 365 RPKLRKDMYEKMVQVDPTAPNAEERRVQGV-TKPR 398


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 441 RPKSSRHFQSRHNQADRMAPSAAQESVKNV*GKPK 545
           RPK  +    +  Q D  AP+A +  V+ V  KP+
Sbjct: 280 RPKLRKDMYEKMVQVDPTAPNAEERRVQGV-TKPR 313


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 441 RPKSSRHFQSRHNQADRMAPSAAQESVKNV*GKPK 545
           RPK  +    +  Q D  AP+A +  V+ V  KP+
Sbjct: 599 RPKLRKDMYEKMVQVDPTAPNAEERRVQGV-TKPR 632


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 676 HPPKGFVNILDEVVIYNDP 732
           +PPKG  +   +V++ N P
Sbjct: 332 NPPKGAADFTAQVIVLNHP 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,509
Number of Sequences: 438
Number of extensions: 5008
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)