Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F24
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)              27   8.3  
SB_28928| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = +2

Query: 152 GALYGKILRTLQKMPETSV--YRKYTEQIVRE-RAAVLTQTKDSFEIEKKIN---CGQAE 313
           GA+     R L  + ET    Y++  EQ  +  +  +L + K+ FE+EKKI    C +  
Sbjct: 497 GAVCATPSRELCALEETPAAEYQQQLEQFCKLLQEQLLAEKKEKFELEKKIREEVCAEMA 556

Query: 314 ELIIQAENELN 346
           E ++  ENE +
Sbjct: 557 EQLVTIENEFS 567


>SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)
          Length = 582

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
 Frame = +2

Query: 224 EQIVRERAAVLTQTKDSFEIEKKINCGQAEELII------QAENELNLARKMLNWKPWEP 385
           EQ+   + A++   +   ++E ++  GQ EE+ I      +AEN+L L  + L   P + 
Sbjct: 443 EQLQGYKQALVRHAEAKSDLELQLEQGQTEEMKIKHQECREAENQLRLIEQRLGMTPTQY 502

Query: 386 LMAKPP----KGQWEWPPSKA 436
            M   P      +   PPS+A
Sbjct: 503 DMPASPATMLHTELNTPPSRA 523


>SB_28928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 239 ERAAVLTQTKDSFEIEKKINCGQAEELIIQAENELNLARKMLNWKPWEPLMAK 397
           E A + +  KD F    K+N  +  +L+   + ++ L+ + +  + WE L  K
Sbjct: 264 ENALIYSAQKDGFSTNCKLNDEKLVDLVKTYKTDMGLSNEDIYGRIWEKLKLK 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,724,896
Number of Sequences: 59808
Number of extensions: 230030
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)