Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F23
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    65   3e-12
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    64   4e-12
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   4.4  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   5.9  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 65.3 bits (152), Expect = 3e-12
 Identities = 33/56 (58%), Positives = 41/56 (73%)
 Frame = +2

Query: 101 RRGGKTPNRSK*RRTLXNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 268
           RR   T  R K + T  +VKFK+RCS++LYTLV+ D +KAEKL+QSLPP L V EV
Sbjct: 16  RRKDATSARIK-KNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTEV 70



 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = +1

Query: 61  MPREIKDIKDFLIKARRKDAKSVKIKKN 144
           MPR+I DIK FL  ARRKDA S +IKKN
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKN 28


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 64.5 bits (150), Expect = 4e-12
 Identities = 33/55 (60%), Positives = 39/55 (70%)
 Frame = +2

Query: 104 RGGKTPNRSK*RRTLXNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 268
           RG  T  R K +     VKFK+RCSR+LYTLV+ D +KAEKL+QSLPP L V EV
Sbjct: 17  RGDATSARVK-KNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPALTVTEV 70



 Score = 35.5 bits (78), Expect = 0.002
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +1

Query: 61  MPREIKDIKDFLIKARRKDAKSVKIKKN 144
           MPR++ DIK FL  A R DA S ++KKN
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKN 28


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 144 VLLYFDRFGVFPPRLN*KVFDIFD 73
           VLLY  RF V  P+L   +F  FD
Sbjct: 98  VLLYGPRFSVLSPKLYGGIFITFD 121


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 156 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 287
           S S +      TP SS       N   +YL ++ LKK   V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,101,694
Number of Sequences: 5004
Number of extensions: 17863
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)