Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F23
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    69   8e-13
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     67   4e-12
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     66   5e-12
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744...    27   5.3  

>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 69.3 bits (162), Expect = 8e-13
 Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
 Frame = +2

Query: 17  LDPLTVLVENYSSSTCRVKSKIS-KTF*LRRGGKTPNRSK*RRTLXNVKFKVRCSRFLYT 193
           +DP+ VLV   ++   + K     K F L    K     + +RT   VKFKVRCS++LYT
Sbjct: 15  IDPVVVLVCVVATLATQPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYT 74

Query: 194 LVITDKEKAEKLKQSLPPGLQVKEV 268
           L + D +KA KLKQSLPPGL V+EV
Sbjct: 75  LCVFDADKANKLKQSLPPGLTVQEV 99


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 34/61 (55%), Positives = 41/61 (67%)
 Frame = +2

Query: 86  KTF*LRRGGKTPNRSK*RRTLXNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 265
           K F L    K     + +RT   VKFKVRCS++LYTL + D +KA KLKQSLPPGL V+E
Sbjct: 9   KDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGLTVQE 68

Query: 266 V 268
           V
Sbjct: 69  V 69



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +1

Query: 61  MPREIKDIKDFLIKARRKDAKSVKIKK 141
           MP++I +IKDFL+ ARRKDA+SV+IK+
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKR 27


>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 66.5 bits (155), Expect = 5e-12
 Identities = 34/61 (55%), Positives = 41/61 (67%)
 Frame = +2

Query: 86  KTF*LRRGGKTPNRSK*RRTLXNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 265
           K F L    K     + +R+   VKFKVRCSR+LYTL + D +KA KLKQSLPPGL V+E
Sbjct: 9   KDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSLPPGLTVQE 68

Query: 266 V 268
           V
Sbjct: 69  V 69



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 18/28 (64%), Positives = 26/28 (92%)
 Frame = +1

Query: 61  MPREIKDIKDFLIKARRKDAKSVKIKKN 144
           MP++I +IKDFL+ ARRKDA+SV+IK++
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRS 28


>02_05_0958 +
           33073302-33073442,33073839-33073913,33074382-33074497,
           33076863-33076977,33077100-33077228,33078907-33078954,
           33079343-33079469,33079634-33079789,33080031-33080287,
           33080431-33080580,33080660-33080714,33080793-33081088,
           33081252-33081335,33081869-33081941,33082164-33082291,
           33082905-33083090,33083179-33083316,33083394-33083519,
           33083705-33083965
          Length = 886

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 14  LLDPLTVLVENYSSSTCRVKSKISKTF 94
           +LD L V++EN SS+T   +S I+ T+
Sbjct: 395 ILDALAVVLENISSTTPVARSTIAATY 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,021,248
Number of Sequences: 37544
Number of extensions: 108962
Number of successful extensions: 250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)