Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F23
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    75   1e-14
AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical ...    27   3.7  
Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z77658-7|CAB01154.1|  254|Caenorhabditis elegans Hypothetical pr...    26   6.4  
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    26   8.5  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    26   8.5  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 35/62 (56%), Positives = 45/62 (72%)
 Frame = +2

Query: 86  KTF*LRRGGKTPNRSK*RRTLXNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 265
           K F ++   K     K ++   N KFKVRC+ +LYTLV+ DK+KAEKLKQSLPPG+QVKE
Sbjct: 9   KDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKE 68

Query: 266 VK 271
           +K
Sbjct: 69  LK 70



 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 25/28 (89%), Positives = 28/28 (100%)
 Frame = +1

Query: 61  MPREIKDIKDFLIKARRKDAKSVKIKKN 144
           MP+EIK+IKDFL+KARRKDAKSVKIKKN
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKN 28


>AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical
           protein C01B12.5 protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 207 SVMTRVYRNLEHRTLNLTFXRVLLYFDRFGVFPP 106
           S+++ +YR L ++     F ++  +FD F VF P
Sbjct: 44  SILSVIYRILLNKAQREVFEQLCTFFDTFSVFIP 77


>Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical
           protein C09F12.2 protein.
          Length = 604

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 20  DPLTVLVENYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLXNVKFKVRCSRFLYT 193
           +PL +L++   S   +  +K   T  +   G TP++ + +R L N K+  +  RF+ T
Sbjct: 182 EPLDLLMDTIESIASQPNAKEKITCLVGMEGGTPDKEEKKRILDN-KYGPKFERFIVT 238


>Z77658-7|CAB01154.1|  254|Caenorhabditis elegans Hypothetical
           protein F14D7.8 protein.
          Length = 254

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 204 VMTRVYRNLEHR---TLNLTFXRVLLYFDRFGVFPPRL 100
           V+  VY N E     + N+ +  VLLYF  F VFP  L
Sbjct: 54  VLFGVYNNTERSLRWSANIVYFYVLLYFAIFLVFPVML 91


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 188 YTLVITDKEKAEKLKQSLPPGLQVKEVK 271
           +T V+  K   EKL +  P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 188 YTLVITDKEKAEKLKQSLPPGLQVKEVK 271
           +T V+  K   EKL +  P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,102,302
Number of Sequences: 27780
Number of extensions: 99904
Number of successful extensions: 312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)