Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F23
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.6  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +1

Query: 52  VFNMPREIKDIKDFLIKARRKDAKSVKIKKNPXECQVQGSMLKVP 186
           +F   + I  I+  + K+ +  +   +  KNP  C V  + L  P
Sbjct: 161 IFTSSQNIAVIEYRIPKSGKGFSLFARFLKNPRPCNVLATSLTEP 205


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 185  LYTLVITDKEKAEKLKQSLP 244
            LYT V+  +E+    K++LP
Sbjct: 1249 LYTRVVDGREELNHGKRTLP 1268


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 185  LYTLVITDKEKAEKLKQSLP 244
            LYT V+  +E+    K++LP
Sbjct: 1245 LYTRVVDGREELNHGKRTLP 1264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,132
Number of Sequences: 438
Number of extensions: 1085
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)