Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_F21
(801 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011832-1|AAH11832.3| 689|Homo sapiens Pentatricopeptide repea... 64 7e-10
Y17866-1|CAA76900.1| 865|Homo sapiens tenascin-X protein. 30 8.5
Y13782-1|CAA74109.1| 258|Homo sapiens tenascin-X protein. 30 8.5
U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein. 30 8.5
AL929593-3|CAI41781.1| 3295|Homo sapiens tenascin XB protein. 30 8.5
AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein. 30 8.5
AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein. 30 8.5
AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein. 30 8.5
AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein. 30 8.5
AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein. 30 8.5
AL049547-4|CAB89298.1| 865|Homo sapiens dJ34F7.1.3 (tenascin XB... 30 8.5
AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB... 30 8.5
>BC011832-1|AAH11832.3| 689|Homo sapiens Pentatricopeptide repeat
domain 3 protein.
Length = 689
Score = 63.7 bits (148), Expect = 7e-10
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 1/149 (0%)
Frame = +3
Query: 285 ILQALSTTVGIDPTAAHYKYHDDPYLIPLSNYRKRAYALAAEAGRKAAIWIRDEHADLFT 464
+LQAL++TV D TA Y + DDPYL+P S+ R++ LA ++G A +I + + F
Sbjct: 70 VLQALASTVNRDTTAVPYVFQDDPYLMPASSLESRSFLLAKKSGENVAKFIINSYPKYFQ 129
Query: 465 TRIWDPPLRKKTPYYNADPKIEAFSPKPIYNDESKVTEEDLIYTIRNALIEDSIKVY-QL 641
I +P + P Y +P+I+ ++E L I ++ S+ ++ QL
Sbjct: 130 KDIAEPHIPCLMPEY-FEPQIK------------DISEAALKERIELRKVKASVDMFDQL 176
Query: 642 LGGSQGVSDEXXXXXXXXXCFYNEKEPDS 728
L VS E C+Y ++EP +
Sbjct: 177 LQAGTTVSLETTNSLLDLLCYYGDQEPST 205
>Y17866-1|CAA76900.1| 865|Homo sapiens tenascin-X protein.
Length = 865
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 326 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 384
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 385 GPQVVPVEGHERSVTVTPLDAGRK 408
>Y13782-1|CAA74109.1| 258|Homo sapiens tenascin-X protein.
Length = 258
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 50 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 108
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 109 GPQVVPVEGHERSVTVTPLDAGRK 132
>U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein.
Length = 4289
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 1736 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 1794
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 1795 GPQVVPVEGHERSVTVTPLDAGRK 1818
>AL929593-3|CAI41781.1| 3295|Homo sapiens tenascin XB protein.
Length = 3295
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 727 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 785
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 786 GPQVVPVEGHERSVTVTPLDAGRK 809
>AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 1654 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 1712
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 1713 GPQVVPVEGHERSVTVTPLDAGRK 1736
>AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 1654 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 1712
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 1713 GPQVVPVEGHERSVTVTPLDAGRK 1736
>AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 1654 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 1712
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 1713 GPQVVPVEGHERSVTVTPLDAGRK 1736
>AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 1654 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 1712
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 1713 GPQVVPVEGHERSVTVTPLDAGRK 1736
>AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 1654 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 1712
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 1713 GPQVVPVEGHERSVTVTPLDAGRK 1736
>AL049547-4|CAB89298.1| 865|Homo sapiens dJ34F7.1.3 (tenascin XB
(isoform 3)) protein.
Length = 865
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 326 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 384
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 385 GPQVVPVEGHERSVTVTPLDAGRK 408
>AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB
(isoform 1)) protein.
Length = 4288
Score = 30.3 bits (65), Expect = 8.5
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 RSLVSIESQKTPQSGASSDGISPPVRIQ--RGPTDILQALSTTVG---IDPTAAHYKYHD 350
RS VS+E+ KT G +S G P + PT LS TV D +K D
Sbjct: 1735 RSPVSVEA-KTVARGDASPGAPPRLGELWVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKD 1793
Query: 351 DPYLIPLSNYRKRAYALAAEAGRK 422
P ++P+ + + +AGRK
Sbjct: 1794 GPQVVPVEGHERSVTVTPLDAGRK 1817
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,272,604
Number of Sequences: 237096
Number of extensions: 2192178
Number of successful extensions: 3918
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3916
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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