Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F21
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-24|AAF60413.1|  660|Caenorhabditis elegans Hypothetical...    81   1e-15
Z32679-9|CAA83593.3|  337|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF038623-6|AAB94154.1|  388|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AC006708-24|AAF60413.1|  660|Caenorhabditis elegans Hypothetical
           protein Y110A7A.19 protein.
          Length = 660

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 64/210 (30%), Positives = 95/210 (45%), Gaps = 1/210 (0%)
 Frame = +3

Query: 174 KCLCRSLVSIESQKTPQSGASSDGISPPVRIQRGPTDILQALSTTVGIDPTAAHYKYHDD 353
           + + RSL S+E        A S  ++    I+R PTD+L ALS TVG D TA H+ Y DD
Sbjct: 5   RVITRSLSSVEP-------ALSQKLTIQPAIERSPTDLLNALSETVGPDTTAPHFAYIDD 57

Query: 354 PYLIPLSNYRKRAYALAAEAGRKAAIWIRDEHADLFTTRIWDPPLRKKTPYYNADPKIEA 533
           P  IP +   K+ Y +A E G++AA  +  E   LF      P L    P + ADP    
Sbjct: 58  PITIPSTQSTKKTYFMAKEFGKRAARELATEWPTLFAFDRDQPQLPVFRPRHLADPL--- 114

Query: 534 FSPKPIYNDESKVTEEDLIYTIRNALIEDSIKVYQLLGGSQ-GVSDEXXXXXXXXXCFYN 710
                    + + TE +L+  I +  ++DS  +Y+ +      VS++          +YN
Sbjct: 115 ---------QVEPTENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYN 165

Query: 711 EKEPDSVEWLEERWFSANTXERQAATWRLG 800
                  EW EE     N  E   ++W+ G
Sbjct: 166 SSNVPFAEW-EEFVGMRNFGEDSTSSWKSG 194


>Z32679-9|CAA83593.3|  337|Caenorhabditis elegans Hypothetical
           protein C05B5.5 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 8/31 (25%), Positives = 22/31 (70%)
 Frame = +1

Query: 181 YVDPW*VSKVRKLHKVVPLVMVYHRRFAYKE 273
           Y++PW + K+ ++ K + + ++ +++FA K+
Sbjct: 29  YLNPWEIFKLSRISKAIHVTILKNKKFAVKD 59


>AF038623-6|AAB94154.1|  388|Caenorhabditis elegans Hypothetical
           protein T08B6.2 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -3

Query: 361 KYGSSWYL*CAAVGSIPTVVDKA*SISVGPLCMRTGG-DIPSLEAPLCGVF*LSILTKD 188
           KY   W+L    VGS+P         SV P     G   +PSL  P  G F   +  +D
Sbjct: 247 KYYDGWHLLSHIVGSLPISGTPYPIYSVNPRVSGLGSLVLPSLSVPFSGRFYFVVTVQD 305


>AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical
           protein C41D11.6 protein.
          Length = 852

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 753 TISPLTIPQNQAPFHYRNTEVATTAVLVHHSLLDS 649
           T+S  T   N+AP  YR   VA T VL+   LL S
Sbjct: 350 TVSEDTFNDNRAPQGYRADAVAFTPVLIPGQLLKS 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,234,521
Number of Sequences: 27780
Number of extensions: 362066
Number of successful extensions: 987
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)