Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F19
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    31   0.15 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.3  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   3.3  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    27   4.4  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   7.6  

>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +1

Query: 466 VTHVLTPFTTLQSYRRTQFLDGGVFDNVPISKLYLKRNQMEIMERILGTNSTELYNKRQ 642
           +T V+ PF+T  +  + +FL G +  ++P   L +    +E  +R     +  +Y K++
Sbjct: 295 ITEVMEPFSTACTILQKEFLPGNLCKDLPTKLLNMFETVIEAYDRQASRYNVHIYQKKK 353


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 337  TVYDTKKSCHLNSKLYRIGYEIQKAFYSLYEACF 438
            TV D  ++C L  +++ I YE +   +SL   CF
Sbjct: 1795 TVEDRVRTCELFKEVFDIDYEPRTIGFSLSSQCF 1828


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 127 SESRTDCSLCRPAMDYRNRSSMTGRNQHLRRNCSKT 20
           S+    C  C   + + N S  T  N H+ R CS T
Sbjct: 587 SDFSETCPACEATVQFNNTSLATCDNGHVWRRCSVT 622


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 181 PGSRNHIVLGNETGNGRQFDVLDAKCVEKTSFLLGGWRGEFRNVTCKTQPWTTVYDTKKS 360
           P SR   +L  + GN    D     C+ +      G       ++C TQP + VY+T+ +
Sbjct: 66  PLSRQSTILDADEGNQDVSDTTPNACLNE------GRHSPKSAISCVTQPVSPVYNTRAA 119

Query: 361 CHLNS 375
            +L +
Sbjct: 120 ANLRN 124


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 160 HRFSNLLCRSDSESRTD-CSLCRPAMDYRNRSSMTGRNQHLRRNCSKTNNHR 8
           HR +N +   D    +D C++C PA   +N+      N+H + +  +T N +
Sbjct: 505 HRMANWVM--DYHQASDKCTVCTPASLSKNKKPYMQENEHQKDSHEETFNEQ 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,538,299
Number of Sequences: 5004
Number of extensions: 75105
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)