Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_F19
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 32 0.49
08_02_0766 - 20993207-20993307,20993510-20993612,20993686-209937... 30 2.0
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 30 2.0
07_03_1292 - 25558643-25559376,25559989-25560097,25560578-255606... 29 4.6
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 29 4.6
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974... 29 6.1
01_05_0057 + 17705023-17705143,17706186-17706538,17708002-177080... 29 6.1
12_02_0675 + 21814048-21814368 28 8.1
01_01_0016 - 88825-90411 28 8.1
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 32.3 bits (70), Expect = 0.49
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 547 VPISKLYLKRNQMEIMERILGTNSTELYNKRQALTRGHLAPRADFPLRAQMRATFQYINT 726
+ IS L L +++++ R+L T L N A T ++ + F L ++ F Y++
Sbjct: 348 ITISSLLLDQHEIDEWHRVLNTIGCGLANDPNAETMSNILSLSFFNLPHYLKTCFMYLSV 407
Query: 727 APQWRTI 747
P+ R I
Sbjct: 408 FPEDRKI 414
>08_02_0766 -
20993207-20993307,20993510-20993612,20993686-20993730,
20993848-20993916,20994463-20994510,20995357-20995404,
20995492-20995551,20996063-20996119,20996403-20996471,
20996511-20996603
Length = 230
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -1
Query: 597 LHNFHLIPFKIQFTNGHIIEYASVQELGTSVTL*RRKRR 481
L+ HL+ F + F NG I+E++++ + V L R +RR
Sbjct: 184 LYELHLL-FPLHFLNGRIVEWSAIPAVWYHVILVRTRRR 221
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 253 KCVEKTSF-LLGGWRGEFRNVTCKTQPWTTVYDTKKSCHLNSKLYRI 390
KC K S ++G W+ E+ T KT W T T LNSKL +
Sbjct: 458 KCKIKGSHTIVGLWKHEYWQPTMKTSDWYTKSCTYSWVSLNSKLINL 504
>07_03_1292 -
25558643-25559376,25559989-25560097,25560578-25560676,
25560797-25560893,25560973-25561027,25561072-25561187,
25561445-25561562,25562369-25562684
Length = 547
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 287 AGGVSLETSRAKLSRGPRCTTRKRV 361
AGG + +TSRA+L R R T R R+
Sbjct: 360 AGGQNTKTSRARLDRSDRSTNRARM 384
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 780 RGFQSPPVAGIDCPPLRGRVYVLECGPHLR 691
RGF S + CPPL+G Y+L C P ++
Sbjct: 1209 RGFTSCYIWA--CPPLKGEDYILYCHPEIQ 1236
>01_06_1760 -
39697079-39697162,39697280-39697340,39697415-39697479,
39697579-39697860,39697938-39698012,39698121-39698195,
39698343-39698399,39698653-39698726,39698912-39699055,
39699608-39699662,39700027-39700149,39700276-39700320,
39701068-39701160,39701249-39701662
Length = 548
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/76 (28%), Positives = 31/76 (40%)
Frame = +1
Query: 421 LYEACFDLSEMKTHYVTHVLTPFTTLQSYRRTQFLDGGVFDNVPISKLYLKRNQMEIMER 600
L EA L HYV +V+T F+T RRT + + + + I+E
Sbjct: 463 LDEATSALDAESEHYVKNVITKFSTDPKARRTVIIIAHRLSTIQAADRIIVMENGNIVE- 521
Query: 601 ILGTNSTELYNKRQAL 648
N +EL NK L
Sbjct: 522 --DGNHSELINKHDGL 535
>01_05_0057 +
17705023-17705143,17706186-17706538,17708002-17708044,
17708698-17709140
Length = 319
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 352 SCRTPWSTAEFCT*RF*THPSSL 284
SCR P TA+FCT R+ P+S+
Sbjct: 26 SCRDPSPTAKFCTLRYEFKPASI 48
>12_02_0675 + 21814048-21814368
Length = 106
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 831 ACVDCHTVTELNDLXP*R--GFQSPPVAGIDCPPLRGRVYVLECGPHLRSKREVCARGQ 661
+C+ C + DL P G + PP G+ PP G V++ GP+ R ++ R Q
Sbjct: 6 SCIICGVGEKDCDLAPFTPVGSRGPPPGGL--PPTPGGVHLRRKGPYRRPRKPTEVRSQ 62
>01_01_0016 - 88825-90411
Length = 528
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 581 KWKLWRGSSERTALSCITNDRL*LVVTWPLAQTSLFERR 697
KW L RG +RT + D L V + T+LF RR
Sbjct: 188 KWNLLRGYPQRTIFDSLAADALDYRVYFKTIPTTLFYRR 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,903,278
Number of Sequences: 37544
Number of extensions: 520377
Number of successful extensions: 1400
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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