Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F19
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)             34   0.12 
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       33   0.22 
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      29   4.7  
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    29   4.7  
SB_46448| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_45686| Best HMM Match : T-box (HMM E-Value=0)                       28   8.2  

>SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)
          Length = 387

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 649 TRGHLAPRADFPLRAQ-MRATFQYINTAPQWRTINSGDWGALESALR 786
           +RGH+AP AD     Q M  TF   N  PQ    NS  W  LES  R
Sbjct: 157 SRGHMAPAADCRFDQQAMSETFFLSNVVPQDLNNNSSFWYRLESYCR 203


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +1

Query: 616  STELYNKRQALTRGHLAPRADFPL---RAQMRATFQYINTAPQWRTINSGDWGALESALR 786
            ST  +  +    RGH+ P AD      R  M  TF   N APQ+   N  DW  LE  +R
Sbjct: 1329 STCTHYYKSGFDRGHMVPNADHDYDEYRPTMN-TFLLSNIAPQYHKFNIRDWLNLEIYVR 1387

Query: 787  XKVVQLGHSVTVYTG 831
               +  G ++ V +G
Sbjct: 1388 D--LASGSTIYVISG 1400


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 320  LHVTFLNSPLQPPNRNDVFSTH 255
            L +TF    LQ  NRNDVF T+
Sbjct: 1321 LKITFAGETLQDTNRNDVFKTY 1342


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 2/121 (1%)
 Frame = +1

Query: 223  NGRQFDVLDAKCVEKTSFLLGGWRGEFRNVTCKTQPWTTVYDTKKSCHLNSKLYRIGYEI 402
            N R++DV   +  ++    LG  +G  + VT   Q W              KL+R    I
Sbjct: 1432 NMRRYDVGRIRQPDRPILFLGDGKGMKKLVTLDAQSWDVRKSRSIDPKYLDKLHRYEGVI 1491

Query: 403  QKAFYSLYEACFDLSEMKTHYVTHVLTPFTTLQS--YRRTQFLDGGVFDNVPISKLYLKR 576
             K   ++    FDLS         V+   + L S  Y   + LD  +++++     YL +
Sbjct: 1492 NKTDKTIESGQFDLSASVDEKSNKVIKLVSKLDSDVYATCRGLDDHIYNDLNSKIGYLPK 1551

Query: 577  N 579
            +
Sbjct: 1552 S 1552


>SB_46448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/77 (22%), Positives = 31/77 (40%)
 Frame = +1

Query: 364 HLNSKLYRIGYEIQKAFYSLYEACFDLSEMKTHYVTHVLTPFTTLQSYRRTQFLDGGVFD 543
           HL   +  +GY  +    + Y     +     HY   +  P  ++   +   FL GG   
Sbjct: 176 HLAEAIGYLGYTPEAGIVNYYPLSASMGGHTDHYELDLSWPLISVSFGQSAVFLIGGKTK 235

Query: 544 NVPISKLYLKRNQMEIM 594
           +V  + LY++   + IM
Sbjct: 236 DVKPTALYIRSGDILIM 252


>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 160 HRFSNLLCRSDSESRTDCSLCRPAMDYRNRSS 65
           H  S +L R+D ES+ D S C+     R +S+
Sbjct: 865 HDASPILIRTDQESKLDSSCCQSCSSLRQKSA 896


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,368,701
Number of Sequences: 59808
Number of extensions: 582429
Number of successful extensions: 1853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)