Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F19
         (840 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   0.54 
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   2.9  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            24   6.6  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.5 bits (58), Expect = 0.54
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 37   DVDAGCVLSLNSDFGNPSPVYIKNNQFLIPNLTD 138
            +VDA   LS   + GN    +  N+QF+I +L D
Sbjct: 1112 EVDAALDLSHTQNIGNMLKAHFTNSQFIIVSLKD 1145


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 412 FYSLYEACFDLSEMKTHY 465
           F S+Y+ CFD  E   H+
Sbjct: 472 FRSIYQGCFDRGEFPAHW 489


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 262 EKTSFLLGGWRGEFRNVTCKTQPWTTVY 345
           EK +  L GW  E R+      PW  V+
Sbjct: 591 EKLARALKGWHPEDRSARAMLTPWKGVF 618


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 909,858
Number of Sequences: 2352
Number of extensions: 18883
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88891965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)