Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F19
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.38 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   8.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 265 KTSFLLGGWRGEFRNVTCKTQPWTTVY 345
           K    LGGW    R+     QPW  V+
Sbjct: 565 KLGSALGGWHPSDRSARLMLQPWANVF 591


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 64  LNSDFGNPSPVYIKNNQFLIPNLTDRVSLRSGEFMV 171
           LNS + N SP+   +     P LTD  S  +GE  +
Sbjct: 4   LNSMYNNVSPLQCTSPFLGGPQLTDVCSASNGELFL 39


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 663 QVTTSQSLSFVIQLSAVRSEDPLHNFHLIPFKIQFTN 553
           Q+T S ++S   ++S V   DP+ +    P    FT+
Sbjct: 9   QITNSTTMSVKNEISTVEPVDPVKSLVCSPDLSVFTS 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,598
Number of Sequences: 438
Number of extensions: 5370
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)