Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F16
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    28   1.6  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    27   2.8  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   8.4  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 227 RCNRLHGSQGVEQGLHAQKMVPRCYVSQRSREPHHGEREERFVLGPRISGASR 385
           R  R+HG  G    L ++   P      RSR P++ ER +R  + PR    SR
Sbjct: 102 RGGRVHGDSG---RLRSRSPSPH---EARSRSPYNDERSDRRSMSPRYRSRSR 148


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 265 LLNSLRTVETIAPAAGTASTEASMQADRAAGANT 164
           L+N+   V    P AGT    AS++AD A  +NT
Sbjct: 78  LMNNNMGVYFFGPEAGTEHDAASVKADHAIPSNT 111


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 283 NGST-VLCQPKKPRASSWRKGRTVRSWSENLRRIPVNTCCLSES 411
           NG+T V    K P   +   GR VR W +     P++T   SE+
Sbjct: 367 NGATQVKWNYKNPHILASSHGRLVRIWDDRYGSAPLHTIKTSEN 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,191
Number of Sequences: 5004
Number of extensions: 60648
Number of successful extensions: 204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)