Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_F16
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 31 0.94
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 3.8
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 29 3.8
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 29 5.0
06_03_0283 - 19148158-19148574 28 6.6
10_08_1037 - 22477358-22478752 28 8.8
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004 28 8.8
09_01_0019 + 403078-404211 28 8.8
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 28 8.8
01_07_0217 + 42072475-42072915 28 8.8
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 31.1 bits (67), Expect = 0.94
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Frame = +3
Query: 207 VLAVPAAGAIVSTVLKELSKAFMLKKWFHGVMSAKEAESLIMEKGKNGSFLVRESQAHPG 386
V+A +AG + E K KK+ G A SL E G ++ AHP
Sbjct: 70 VVATESAGRQLPVGFIERVKEDFSKKYSGGKAKNATANSLKREYGPKLKEHMKYCDAHPE 129
Query: 387 EYVLSVRVRGRVSHVL-IRRQHNKYDVGSGEQFDDLVGLIEHFRS 518
E +V+ +V+ V + Q+ + + GE+ + LV E RS
Sbjct: 130 EIDKLAKVKAQVTEVKGVMMQNIEKVLDRGEKIELLVDKTEDLRS 174
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 441 RQHNKYDVGSGEQFDDLVGLIEHFRSYPMIETSGDVLRLLQPVSGTRLRAHDIDQKVQEM 620
R H + +G G+ VGL+ + Y +ET + L + R ++DQK EM
Sbjct: 972 RDHKRQKIGEGDTSKSSVGLV--YPMYGDVETDRTQVHLFNQET-RRYDRTEVDQKCPEM 1028
Query: 621 -QGIEDRQKM 647
Q +D+ M
Sbjct: 1029 LQEYKDKHSM 1038
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 188 RQGSRRQHSEPAQPWIIFRHHSSLLH*NIFYKTWISLST*VVNK 57
R +R +PAQP I++ H + LH + W +S+ V NK
Sbjct: 259 RTAIQRFVQDPAQPAILYNHDNEFLH---YQDDWYIISSKVENK 299
>06_01_0916 +
7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 243 TVLKELSKAFMLKKWFHGVMSAKEAESLIMEKGKNGSFLVRESQAHPGEYVLSVRVRGRV 422
T L E +K F+L++ HG + AE L++ K K + RE +L R+
Sbjct: 721 TSLNEENKKFLLRQKLHG-SEMRRAEKLLVIKTKQKEDIAREEAVLERRKILEAEKMQRL 779
Query: 423 SHVLIRRQ 446
+ + +++
Sbjct: 780 AEIQRKKE 787
>06_03_0283 - 19148158-19148574
Length = 138
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 228 LQPGLRARRHPCRPTGQPAP 169
L P R RRHPC QP P
Sbjct: 6 LPPARRHRRHPCMEPSQPQP 25
>10_08_1037 - 22477358-22478752
Length = 464
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Frame = -2
Query: 267 PCSTP*EPWRRLH---LQPGLRARRHP-------CRPTGQPAPTLRAGS 151
P STP P RRLH PGLR P C P P+P R GS
Sbjct: 125 PPSTPTPPIRRLHALPFLPGLRLASPPRPIAPPCCSPPPIPSPVHRHGS 173
>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
Length = 258
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 637 RSSIPCISCTFWSMS*ALSLVPLTGCKRRSTSPDVSIIGYERKC 506
R +PC S ++++ PL C+ SPD +G R+C
Sbjct: 206 RVDVPCSSVIYFNVGVVFKHFPLAVCEAPPPSPDTG-LGLGRQC 248
>09_01_0019 + 403078-404211
Length = 377
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 578 QTKSSRHRPESTGDAGNRRSTK 643
+ K+SRHR S G + +RRSTK
Sbjct: 214 EKKTSRHRSSSRGRSKHRRSTK 235
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 340 PFSMMRLSASLADITPWNHFLSMKALLNSLRTVET 236
P S LS LA + W HF ++ LLN + +E+
Sbjct: 633 PVSSTSLSVCLAPLVCWVHFHTIYMLLNFISKIES 667
>01_07_0217 + 42072475-42072915
Length = 146
Score = 27.9 bits (59), Expect = 8.8
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +3
Query: 471 GEQFDDLVGLIEHFRSYPMIETSGDVLRLLQPVSGTRLRAHDIDQKVQEMQGIEDRQKME 650
G++ + GL+E FR Y M E G + P S R+ + K+ QGIE+ Q M
Sbjct: 75 GDEEERCRGLMEAFRMYEM-EGEGRIT----PASLKRMLS-----KLGSHQGIEECQTMI 124
Query: 651 CNTGFDGE 674
C DG+
Sbjct: 125 CRFDLDGD 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,338,634
Number of Sequences: 37544
Number of extensions: 445748
Number of successful extensions: 1474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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