Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_F15
(870 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013) 51 1e-06
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 37 0.019
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 37 0.019
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15) 33 0.30
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 32 0.70
SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5) 32 0.70
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 31 1.2
SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08) 31 1.2
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018) 30 2.1
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 30 2.8
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) 30 2.8
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 29 3.7
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 29 4.9
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_54530| Best HMM Match : Collagen (HMM E-Value=1.9e-18) 29 4.9
SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_30412| Best HMM Match : E-MAP-115 (HMM E-Value=2.8) 29 4.9
SB_38454| Best HMM Match : DCX (HMM E-Value=4.2) 29 6.5
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34) 29 6.5
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 6.5
SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22) 29 6.5
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_13076| Best HMM Match : NUC202 (HMM E-Value=3) 28 8.6
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 28 8.6
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07) 28 8.6
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)
Length = 185
Score = 51.2 bits (117), Expect = 1e-06
Identities = 30/83 (36%), Positives = 41/83 (49%)
Frame = +1
Query: 277 GVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEAT 456
G G F GLA YL S EI ++ E Y + Y K G +A LD +
Sbjct: 69 GSLGQLMFFGGLAAYLLSNEILIIHEETYIAAVMGGTFYWLMKKAGGPIAEMLDNTSQEI 128
Query: 457 ENEWNEGRNQTVKALEDAIEGEK 525
+ +N GRN ++K L+DAI+ EK
Sbjct: 129 LDAFNVGRNASIKHLQDAIDNEK 151
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 37.1 bits (82), Expect = 0.019
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Frame = +3
Query: 552 GAP-HPGQEGERAPAARGRLQGEAHVRLLRGE-AASGLPAREVERGAPSRPXAHGRLDSE 725
GAP PG G++ G LRG A G E GAP R A G
Sbjct: 379 GAPGSPGLGGQKGDQGMPGKPGNPGAAGLRGAPGARGDYGERGEPGAPGRDGAPGAQGER 438
Query: 726 --QRDQGHHSGPGEAGSGPLHRGPGFPGQE 809
+ +QG G AG G PG PG++
Sbjct: 439 GPRGEQGKQGEKGHAGEGGADGAPGIPGEQ 468
>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
Length = 311
Score = 37.1 bits (82), Expect = 0.019
Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +3
Query: 567 GQEGERAPAA-RGRLQGEAHVRLLRGEAASGLPAREVE---RGAPSRPXAHGRLDSEQRD 734
G+ G + P RGR + E A+GL E RGAP R G+ E D
Sbjct: 43 GRTGAQGPIGDRGRSGPKGAAGEDGAEGAAGLVGDSGEKGYRGAPGRQGLQGKRGPEG-D 101
Query: 735 QGHHSGPGEAGSGPLHRGPGFPG-QEVNGS 821
G G GEAG + PG PG Q NG+
Sbjct: 102 PGSPGGSGEAGDKGVDGPPGSPGPQGFNGA 131
Score = 33.9 bits (74), Expect = 0.17
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Frame = +3
Query: 483 PNRESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRG-EAASGL 659
P R+ G+ RG E + G+G G +G P QG R G + SG
Sbjct: 87 PGRQGLQGK-RGPEGDPGSPGGSG--EAGDKGVDGPPGSPGPQGFNGARGPNGPKGDSGR 143
Query: 660 PAREVERGAPSRPXAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGFPG 803
P ++ +G P P A G + S PG GP GPG PG
Sbjct: 144 PGQDGRQGPPGPPGARGEPGQQAPMMIQVSRPG-PNKGPPGPGPG-PG 189
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 33.9 bits (74), Expect = 0.17
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Frame = +3
Query: 564 PGQEGERAPAARGRLQG----EAHVRLLRGEAASGLPAREVERGAPSRPXAHGRLDSEQR 731
PG G R PA R + G + L + +G+P + G P P A G L E
Sbjct: 1108 PGPAGPRGPAGRNGIDGLPGTKGEPGSLGEKGDAGIPGQRGLTGNPGLPGAQG-LKGEPG 1166
Query: 732 DQGHHSGPGEAGS-GP 776
G + PG G GP
Sbjct: 1167 RDGQNGSPGRKGEPGP 1182
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Frame = +3
Query: 501 GGRNRGREDGAVARAGTGAP----HPGQEGERAPAARGRLQGEAHVRLLRGEAAS-GLPA 665
G G + + GAP PG++GE+ R L G + +GE G
Sbjct: 346 GSGGSGCNGTTIFKGPPGAPGEKGEPGKQGEKGEEGRPGLPGAQGIEGPKGERGEPGNQG 405
Query: 666 REVERGAPSRPXAHGRLDSEQR 731
+ +RG P G L S+ R
Sbjct: 406 LKGDRGVDGNPGPIGPLVSKDR 427
>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
Length = 979
Score = 33.1 bits (72), Expect = 0.30
Identities = 33/110 (30%), Positives = 38/110 (34%), Gaps = 2/110 (1%)
Frame = +3
Query: 501 GGRNRGREDGAVARA--GTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREV 674
G E G A G+ A G+ GE A GEA + GEA A E
Sbjct: 637 GEAGEASEAGVAGEAVEGSEASKAGEAGEAVEAGEASEAGEA---IEAGEAGEASEASE- 692
Query: 675 ERGAPSRPXAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGFPGQEVNGSE 824
A SE + G S GEAG G G+ V GSE
Sbjct: 693 ---AAGEATGEAGEASEASEAGEASEAGEAGEAGEASEAGVAGEAVEGSE 739
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/90 (26%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Frame = +3
Query: 501 GGRNRGREDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREV 674
G E G + AG GA + GE + A GEA GEA A E
Sbjct: 846 GEAGEAGEAGEASEAGEAGGASEASEAGEASEAGEASKAGEASKASEAGEAGEASEAGEA 905
Query: 675 ERGAPSRPXAHGRLDSEQRDQGHHSGPGEA 764
+ E + G S GEA
Sbjct: 906 SEAGEASEAGGASEAGEASEAGEASEAGEA 935
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 31.9 bits (69), Expect = 0.70
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Frame = +3
Query: 486 NRESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGE------- 644
N + G + G + + G + G+ P G L G+A +R L+G
Sbjct: 3714 NTGAPGSQGSTGPRGPIGQPGMAGSQGEKGGKGDPGFPG-LPGQAGLRGLQGPEGQKGSI 3772
Query: 645 AASGLPAREVERGAPSRPXA-HGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGFPGQE 809
A G+P + E+G P RP G R + PG G G + PG PG +
Sbjct: 3773 GAPGIPGKIGEKGVPGRPSTIAGPPGPPGRSKNISGPPGPQGPPGQASQIPGPPGPQ 3829
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 31.9 bits (69), Expect = 0.70
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +3
Query: 567 GQEGERAPAARGRLQGEAHVRLLRGEAAS-GLPAREVERGAPSRPXAHGRLDSEQRDQGH 743
G++GE P G VR +GE+ S GLP +G G + + ++G
Sbjct: 92 GKDGEEGPPGPNGAPGRPGVRGPKGESGSRGLPGNHGVQGERGSQGGRG-IKGGRGNEGS 150
Query: 744 HSGPGEAGS--GPLHRGPGFP 800
PG AG+ G RGP P
Sbjct: 151 AGIPGRAGNKGGRGDRGPVGP 171
Score = 28.3 bits (60), Expect = 8.6
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +3
Query: 567 GQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPXAHGR--LDSEQRDQG 740
G G R P +QG++ G +G + G P +P + G L + G
Sbjct: 1105 GVSGVRGPTGEQGVQGQSGET--GGLGPTGPVGEQGSYGLPGKPGSPGTKGLPGPKGGPG 1162
Query: 741 HHS--GP-GEAGSGPLHRGPGFPG-QEVNGSE 824
GP GEAG LH G PG Q V+G++
Sbjct: 1163 PGGTRGPVGEAGEDGLHGKDGKPGTQGVSGND 1194
>SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5)
Length = 208
Score = 31.9 bits (69), Expect = 0.70
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Frame = +3
Query: 504 GRNRGREDGAVARAG--TGAPHPGQEGERAPAAR----GRLQGEAHVRLLRGEAASGLPA 665
GR R + G +A +G G+ G A + R GR+ G H+ A SG A
Sbjct: 27 GRGRMADSGGMAGSGHMAGSGRMAGSGRMAGSGRMAGTGRMAGSGHMAGSGRMAGSGRMA 86
Query: 666 REVERGAPSRPXAHGRLDSEQR--DQGHHSGPGE-AGSG 773
R GR+ R D G +G G AGSG
Sbjct: 87 GSGRMAGSGRMAGSGRMAGSGRMADSGRMAGSGRMAGSG 125
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 31.5 bits (68), Expect = 0.93
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 681 GAPSRPXAHGRLDSEQRDQGHHSG--PGEAGSGPLHRGPGFPGQEVNGSERYLC 836
G+ S P GR + R + H+G PG +GSGP +G G P + V + +C
Sbjct: 234 GSSSGPNGAGRGPAHSRRRQIHNGGIPGTSGSGPRAQGMG-PQEGVRDASPIVC 286
Score = 29.5 bits (63), Expect = 3.7
Identities = 27/103 (26%), Positives = 33/103 (32%)
Frame = +3
Query: 501 GGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVER 680
GG+ G+ + G G P PG P G QG G+ P +
Sbjct: 486 GGQGWGQPPPGAGQGG-GPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQG 544
Query: 681 GAPSRPXAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGFPGQE 809
G P P A G GP G+G P GQE
Sbjct: 545 GGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQE 587
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 633 LRGEAASGLPAREVERGAPSRPXAHGRLDSEQRDQGHHSGPGEAGS-GPLHRGPGFPGQE 809
LR G P R RG P + A G LD E +QG G+ GS GP+ PG PG +
Sbjct: 110 LRHIGRLGPPGR---RGPPGQNGAPG-LDGENGEQGQKGSSGDPGSEGPV-GPPGKPGMD 164
>SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08)
Length = 277
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Frame = +1
Query: 433 LDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYR 612
L K +E T+ E +E + ALE+AIE +K+ + EL I+ + + +E R
Sbjct: 90 LCKTLEVTDRESDEKMRELEDALEEAIELDKSTADKLAEVELKIKVVQGELEKAVERGDR 149
Query: 613 ERLMYAY--------SEVKRRLDYQLEKSNVERRLAXKHMVDWIVSNVTKAITPDQEKQ 765
+M + SEV R L+ + + + ER + + +++I N+ + + +E +
Sbjct: 150 AEMMCEHLMNDFTGTSEVLRDLEVK-DAAASEREIDNEDKIEFIQENLKQMVYRYEEAE 207
>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
Length = 482
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 613 ERLMYAYSEVKRRLDYQLEKSNVERRLAXKHMVDWIVSNVTKAITPDQEKQALDRCIADL 792
E M+A +V ++ +EKS A + W VS P+ E +D + D+
Sbjct: 281 EATMFALEDVIQKYSNSIEKSMGTGASAARRQ--WAVSEEENTAAPNAEAANVDSAVRDM 338
Query: 793 ASLAR 807
A +A+
Sbjct: 339 AGMAK 343
>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 357 FVLHYIDFLAAQVCCQTHTKSVRTRNTSFRVEELEPFFRNKAKSNFA 217
+VL+ IDF A C HT + + +F+VE F R KS F+
Sbjct: 21 YVLNSIDFEA----CDKHTIGIAYAHAAFKVEAATKFTREPLKSGFS 63
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 29.9 bits (64), Expect = 2.8
Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Frame = +3
Query: 495 STGGRNRGREDGAVARAGTGAPHPGQEGER-APAARGR--LQGEAHVRLLRGEAAS-GLP 662
S G + G G P PG +G R AP G L G ++ RG S G P
Sbjct: 145 SPGAEGKVGLTGQTGPRGPTGP-PGLQGVRGAPGNEGARGLPGNPGLKGKRGATGSRGSP 203
Query: 663 AREVERGAPSRPXAHGRLDSEQR--------DQGHHSGPGEAGSGPLHRGP-GFPG 803
+ +G + G+ + R D+G GPG AG P RGP G PG
Sbjct: 204 GNQGPQGPSGPQGSKGQAGIDGRPGEPGLPGDKGAMGGPGPAGQ-PGIRGPSGAPG 258
Score = 29.5 bits (63), Expect = 3.7
Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Frame = +3
Query: 513 RGREDGAVARAGTGAPHP-GQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAP 689
+G R G P P G +G R L GE+ + G G P + GAP
Sbjct: 86 KGSNGAPGPRGSPGLPGPRGSDGPRGQRGEVGLPGESGSAGMVGRP--GRPGFDGAPGAP 143
Query: 690 SRPXAHGRLDSEQRD-----------QGHHSGPGEAGSGPLHRGPGFPGQ 806
P A G++ + QG PG G+ L PG G+
Sbjct: 144 GSPGAEGKVGLTGQTGPRGPTGPPGLQGVRGAPGNEGARGLPGNPGLKGK 193
Score = 29.5 bits (63), Expect = 3.7
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Frame = +3
Query: 501 GGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVER 680
G E G G P G G + P GE+ R RG G P ER
Sbjct: 423 GKNGNAGEPGERGPVGPQGPQ-GAPGTQGPPGLPGKTGESGPRGERG--TDGKPGAMGER 479
Query: 681 GAPSRPXAHGRLDSEQR--DQGHHSG---PGEAGSGPLHRGPGFPGQE 809
G G + D+G + PGE G+ R PG PG++
Sbjct: 480 GPQGETGPTGLTGPTGKPGDRGSNGADGTPGEPGAQGTKRKPGTPGRQ 527
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/68 (26%), Positives = 25/68 (36%)
Frame = +3
Query: 504 GRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERG 683
GRN GR R+G R+ GR++ AH + G L R +G
Sbjct: 1767 GRNSGRMKSLAHRSGRNGGRMKSLANRSGRNGGRMKSLAHRSMRNGGRMKSLAHRSSRKG 1826
Query: 684 APSRPXAH 707
+ AH
Sbjct: 1827 GRMKSLAH 1834
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 29.9 bits (64), Expect = 2.8
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Frame = +1
Query: 433 LDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQ--GQELLIQAKKENV-----LL 591
L++E+E+ + E E R + VKA E E+ EQ++A+ ++ IQA + + L
Sbjct: 1543 LEEEIESKDAEAEEERTRIVKAAE-GFALEREEQFKAELADKDDCIQATENELNQVKHQL 1601
Query: 592 QLEAAYRERLMYAYSEVKRRLDYQLE 669
QL ++ L+ A E R L++ E
Sbjct: 1602 QLAQEAKKTLLEASDERDRELEHLKE 1627
>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +3
Query: 78 NNVVARGFAFRCEQTDSVHSTSRTGLRLRCSNTRPENLCSPCKG*ARQS*TWLYS*RMVP 257
+ + G+ R ++ ++ G+R +C N ++C C+ R + T + +P
Sbjct: 98 DQAIKEGYIHRGITCNTCQASPICGVRYKCGNCVDYDICERCESQDRHNSTHAFIKIRIP 157
Query: 258 ILPLEN 275
I PL N
Sbjct: 158 IPPLAN 163
>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
Length = 444
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 105 FRCEQTDSVHSTSRTGLRLRCSNTRPENLCS 197
+RC TD H T T +R T P+ LC+
Sbjct: 2 YRCHTTDCAHCTDFTRQTVRTVQTPPDRLCA 32
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 105 FRCEQTDSVHSTSRTGLRLRCSNTRPENLCS 197
+R QTD H T T LR T P+ LC+
Sbjct: 194 YRHHQTDCAHCTDFTRQTLRIVQTPPDRLCA 224
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 105 FRCEQTDSVHSTSRTGLRLRCSNTRPENLCS 197
+R QTD H T T +R T P+ LC+
Sbjct: 290 YRHHQTDCAHCTDTTRQTVRTVQTPPDRLCA 320
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 105 FRCEQTDSVHSTSRTGLRLRCSNTRPENLCS 197
+R QTD H T T +R T P+ LC+
Sbjct: 322 YRLHQTDCAHCTDFTRQTVRIVQTPPDRLCA 352
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 105 FRCEQTDSVHSTSRTGLRLRCSNTRPENLCS 197
+R QTD H T T +R T P+ LC+
Sbjct: 354 YRHHQTDCAHCTDTTRQTVRIVQTPPDRLCA 384
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 29.5 bits (63), Expect = 3.7
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 2/167 (1%)
Frame = +1
Query: 232 GFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKF 411
GF+ E++F SK+ +G+A+Y S I+ + Y +G + +
Sbjct: 2183 GFLREKYFVIGISKSFEISANKTRIGVASYSSSANIHFNFNTYNTGYDVENAINAISFSG 2242
Query: 412 GPK--LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENV 585
G K LA LD E N + + + + AL +G T++ Q L+ +K
Sbjct: 2243 GAKRNLARGLDATFEGLFN-FTDIQPSDINALIVLTDGRATDEIDMAAQRLV--NEKNVT 2299
Query: 586 LLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAXKHMVDWIVS 726
++ + A RL +E++R E + RR+ ++ +++
Sbjct: 2300 IIAVGAGSHVRL----AELRRLAGLASESPLITRRVIQADSMEELIN 2342
>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 29.5 bits (63), Expect = 3.7
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Frame = +3
Query: 519 REDGAVARAGT-GA--PHPGQEGERAPAARG-RLQGEAH-------VRLLRGEAASGLPA 665
RE A R+GT GA +PG+ G+RA RG R QG A VR R SG P
Sbjct: 325 REPRASRRSGTHGARCENPGRRGDRAHRERGARTQGVAEIGHAWSAVREPRASRRSGTPH 384
Query: 666 REVERGA 686
+E GA
Sbjct: 385 WNLEGGA 391
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +3
Query: 651 SGLPAREVERGAPSRPXAHGRLDSEQRDQGHHSGPG-EAGSGPLHRGPGFPGQE 809
SG P R P HG D D G G G + S P HR G PG +
Sbjct: 131 SGPPDRHTPPDRNGPPDRHGPPDRHGMDHGRGRGRGRDRLSPPPHRDRGRPGYD 184
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 29.1 bits (62), Expect = 4.9
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Frame = +3
Query: 489 RESTGGRN-RGRED--GAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 659
R +TG R GR G ++G PG+ G P A+G + + L + A G
Sbjct: 216 RGATGPRGYTGRTGLRGVPGKSGRNGT-PGKNGR--PGAKGAMGPRGYRGLTGSKGARGA 272
Query: 660 PAREVERGAPSRPXAHGRLDSEQRDQGHHSGPGEAGSGPLH--RGP 791
++ RGA RP +G + +G G G L RGP
Sbjct: 273 RGKQGLRGATGRPGRNG-VPGRPGSKGKTGARGATGPRGLRGLRGP 317
>SB_54530| Best HMM Match : Collagen (HMM E-Value=1.9e-18)
Length = 427
Score = 29.1 bits (62), Expect = 4.9
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Frame = +3
Query: 552 GAP-HPGQEGERAPAARGRLQG-EAHVRLLRGEAASG-LP---AREVERGAPSRPXAHGR 713
GAP PG G P + +G + +L +A G +P + +RG P R +G
Sbjct: 214 GAPGDPGLYGPPGPPGKKGPKGPKGRTAILPNKAMIGAIPPFYGPKGDRGVPGRQGMYGL 273
Query: 714 LDSEQR--DQGHHSGPGEAGSGPLHRGPGFPGQ 806
R DQG PG G GFPG+
Sbjct: 274 RGPPGRKGDQGTRGPPGLNGPTGAQGDSGFPGE 306
>SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 513 RGREDGAVARAGTGAPHPGQEGERAPAARG 602
RG E AGT A H G G APA G
Sbjct: 204 RGYEQKTPESAGTSARHSGASGREAPAEAG 233
>SB_30412| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)
Length = 492
Score = 29.1 bits (62), Expect = 4.9
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 3/146 (2%)
Frame = +3
Query: 402 REIRTKVGRLVGQGXXXXXXXXXXXXXPNRE--STGGRNRGREDGAVARAGTGAPHPGQE 575
+E++ K GR G G +E GGR+RG +G+V A +
Sbjct: 123 KELQGKGGRHRGDGEGSVVNVQQEWKERQKELQGNGGRHRGNGEGSVVNA---QQEWKER 179
Query: 576 GERAPAARGRLQGEAHVRLLRGEAASGLPAREVE-RGAPSRPXAHGRLDSEQRDQGHHSG 752
+ GR +G+ ++ + +E++ +G R G + + Q++
Sbjct: 180 QKELQGKGGRHRGDGEGSVVNAQQEWKERQKELQGKGGRHRGNGEGSVVNAQQEWKERQK 239
Query: 753 PGEAGSGPLHRGPGFPGQEVNGSERY 830
+ G G HRG G G VN + +
Sbjct: 240 ELQ-GKGGRHRGNG-EGSAVNAQQEW 263
>SB_38454| Best HMM Match : DCX (HMM E-Value=4.2)
Length = 239
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 663 AREVERGAPSRPX-AHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGFP 800
A+ + + P+R +HGR +S++ D+ S G GP+H P
Sbjct: 69 AKNLSKTTPNRTKPSHGRKNSDRSDRKMSSTTGSIKDGPVHSPRSVP 115
>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
Length = 524
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 63 IKYTINNVVARGFA-FRCEQTDSVHSTSRTGLRLRCSNTRPENLCS 197
I YT+ R A +R QTD H T T +R T P+ LC+
Sbjct: 14 IVYTVQTSPDRLCALYRHHQTDCAHCTVTTRQTVRTVQTPPDRLCA 59
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.7 bits (61), Expect = 6.5
Identities = 24/93 (25%), Positives = 43/93 (46%)
Frame = +1
Query: 436 DKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRE 615
+KEVE NE + + KALE A G+K E+ + + ++ +E LQ + R
Sbjct: 2190 EKEVEMLSRV-NELQEELAKALESAEAGKKAEKQLKEQESEHVELSREKEALQKQLYDRL 2248
Query: 616 RLMYAYSEVKRRLDYQLEKSNVERRLAXKHMVD 714
+ + E R + E S ++ A K +++
Sbjct: 2249 TEISSLKEELSRNKHS-ETSKLDEAEAAKALLE 2280
>SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22)
Length = 350
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/73 (19%), Positives = 35/73 (47%)
Frame = +1
Query: 400 HVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKE 579
H + P+L W++ + + E + + + + +A E + E+ R Q +E + +E
Sbjct: 61 HRECSPELKPWMEAQQKEMEEKLRLKKEEEERIQREAEEAAERERLRIQAEEEARRKAEE 120
Query: 580 NVLLQLEAAYRER 618
+++E R++
Sbjct: 121 EERIRIEEIKRQQ 133
>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 558 PHPGQEGERAPAAR---GRLQGEAHVRLLRGEAASGLPAREVERGAPSRPXAHGRLDSEQ 728
P PGQ+G P + G G+ G+ G P + G P +G +Q
Sbjct: 243 PPPGQQGYGPPPGQQGYGAPPGQQGYGPPLGQQGYGPPPGQQGYGPPPGQQGYGPPPGQQ 302
Query: 729 RDQGHHSGPGEAGSGP 776
G+ S PG+ G GP
Sbjct: 303 ---GYGSPPGQQGYGP 315
>SB_13076| Best HMM Match : NUC202 (HMM E-Value=3)
Length = 472
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 669 EVERGAPSRPXAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGFPGQEVNGSE 824
E E + P H ++ + + + P + S P+H GP P +EV+ ++
Sbjct: 375 ESELSSHHYPTLHKAGEASVGSESNTTSPASSTSSPVHSGPVTPIREVSNAD 426
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 540 RAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 659
R+ G PGQ+GE P+ GR G ++ + SG+
Sbjct: 429 RSTRGTALPGQDGEDRPSGEGRQSGGPGIQAVWEAGTSGV 468
>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
Length = 750
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 505 DAIEGEKTEQWRAQGQELLIQAKKENVL 588
D + + +QW EL ++ KKENVL
Sbjct: 238 DVVLADLDQQWMLDSAELCLEEKKENVL 265
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 540 RAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 659
R+ G PGQ+GE P+ GR G ++ + SG+
Sbjct: 1096 RSTRGTALPGQDGEDRPSGEGRQSGGPGIQAVWEAGTSGV 1135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,305,999
Number of Sequences: 59808
Number of extensions: 604574
Number of successful extensions: 2295
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2265
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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