Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_F13
(808 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 310 1e-84
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7) 31 1.5
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1) 29 5.9
SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3) 29 5.9
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 310 bits (760), Expect = 1e-84
Identities = 144/198 (72%), Positives = 163/198 (82%)
Frame = +3
Query: 213 VYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFT 392
VY+FKYDSTHGRFKG+VE +DG LV+NG ++VF+ +DP IPWG+ GA+YVVESTGVFT
Sbjct: 817 VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876
Query: 393 TTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKV 572
T +KA HL+GGAKKVIISAPSADAPMFV+GVN E YDPS V+SNASCTTNCLAPL KV
Sbjct: 877 TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKV 936
Query: 573 IHDNFEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPA 752
I+DNF + EGLM DGPS K WRDGRGA QN+IPASTGAAKAVGKVIP
Sbjct: 937 INDNFGLEEGLMTTIHAYTATQKTVDGPSAKNWRDGRGAHQNVIPASTGAAKAVGKVIPE 996
Query: 753 LNGKLTGMAFRVPVANVS 806
+NGKLTGMAFRVPVA+VS
Sbjct: 997 VNGKLTGMAFRVPVADVS 1014
>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
Length = 277
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 451 LPVLMPPCLLWVLT*KLMTPLLRSSQMLL 537
+PV+MP CL + K+M PLL +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 29.9 bits (64), Expect = 2.5
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Frame = +1
Query: 241 MAVLRAVLRFRMDSLLLMVTKL-LFSQKGTLRPFRGEKLGLNML*SLLVSLPLQIKHLLT 417
+A L+ V+ ++ + L ++T L + + L P + L +L L V +PLQ+ LT
Sbjct: 380 LAPLQVVITLQVLTSLQVLTSLQVLTSLQVLTPLQ-VPTPLQVLIPLQVLIPLQV---LT 435
Query: 418 WREVLKKLLYQLP--VLMPPCLLWVLT*KLMTPLLRSSQMLLAPQTVLPHLQRLFMI 582
+VL L LP VL+P +L L + +L Q+L PQ + P LQ L ++
Sbjct: 436 PLQVLIPLQVLLPLQVLIPLQVLTPLQVLITLQVLTPPQVLTPPQVLAP-LQVLILL 491
>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 29.1 bits (62), Expect = 4.4
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Frame = +1
Query: 373 SLLVSLPLQIKHLLTWREVLKKLLYQLPVLMPPCLLWVLT*KLMTPLLRSSQMLLAPQTV 552
+LLV L + +L + + + LL + L+ LL VL LM LLR + ++L + +
Sbjct: 104 ALLVKLLRRALLVLINKLLRRALLVLINKLLRRALL-VLMNVLMNKLLRGALLVLMNKLL 162
Query: 553 LPHLQRLFMITXXXXXXXXXXFMPQLLHRKLLMDLLENY-GVMAVVLNKTSFLPLLVLPK 729
+ L ++ M +LL R LL+ + + G + V++NK LLVL
Sbjct: 163 R---RALLVLMNKLLRGALLVLMNKLLRRALLVLMNKLLRGALLVLMNKLLRRALLVLMN 219
Query: 730 LWVRLSLLLM 759
+R +LL++
Sbjct: 220 KLLRRALLVL 229
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 687 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 806
AQ N I G +G I +NG + GMA +AN+S
Sbjct: 374 AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 413
>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
Length = 405
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 448 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 314
D+I +A P + A A S T V S +Y+ AFP G S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219
>SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)
Length = 148
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -3
Query: 764 LAIKSRDNLTHSFGSTSRGRNDVL-LSTTAITP*FSRRS---INSFLCSSCGMNSSHQAL 597
LA K+ N HSF + R + +ST +T F R +N+ LC C H+AL
Sbjct: 27 LATKAAKN--HSFKKIYKIRRSFIDVSTLGLTSGFESRGSRYVNARLCKLCWQQRGHRAL 84
Query: 596 NNFKVIMNNL 567
K I L
Sbjct: 85 FRGKAIQGLL 94
>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 687 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 806
AQ N I G +G I +NG + GMA +AN+S
Sbjct: 63 AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 102
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,191,791
Number of Sequences: 59808
Number of extensions: 568137
Number of successful extensions: 1296
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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