Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F11
         (842 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DUT4 Cluster: Chromosome undetermined scaffold_65, wh...    35   2.2  
UniRef50_Q0WL37 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_A3I2Y5 Cluster: ABC transporter, permease protein; n=1;...    33   9.0  

>UniRef50_A0DUT4 Cluster: Chromosome undetermined scaffold_65, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_65,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 232

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +2

Query: 296 FIFLCDSVLNLLTLIKYCKIE----TFFELLSNNMIVTSYLFSRISFCTINTKFT*TIFV 463
           F+FLC SVL ++T+I Y +I      FF     + +  +Y     SF  ++  FT    V
Sbjct: 138 FLFLCRSVLTIITIISYSQIRKLCAQFFLDEDADSLALNYCLVMASFLILDALFTMICIV 197

Query: 464 LMSNYNFNKYI 496
             SN   N+ I
Sbjct: 198 QGSNNRENQQI 208


>UniRef50_Q0WL37 Cluster: Putative uncharacterized protein; n=1;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 45

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 317 VLNLLTLIKYCKIETFFELLSNNMIVTSYLFSRISF 424
           +  +LTL+ YCK +T   +   NM ++ Y F  I+F
Sbjct: 1   MFEILTLVPYCKYQTCINVRIENMYISCYYFVSINF 36


>UniRef50_A3I2Y5 Cluster: ABC transporter, permease protein; n=1;
           Algoriphagus sp. PR1|Rep: ABC transporter, permease
           protein - Algoriphagus sp. PR1
          Length = 868

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +3

Query: 237 SNIIFSKYLNINCNNKLKCRSYFYV 311
           SNI FSK+L++N NN +  RSYF +
Sbjct: 64  SNIGFSKFLHLNTNNGVMIRSYFKI 88


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,861,662
Number of Sequences: 1657284
Number of extensions: 10476043
Number of successful extensions: 23072
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23063
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)