Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F11
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine...    31   0.78 
AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    29   4.1  

>AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine
           receptor protein 6 protein.
          Length = 562

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 25/72 (34%), Positives = 34/72 (47%)
 Frame = +2

Query: 299 IFLCDSVLNLLTLIKYCKIETFFELLSNNMIVTSYLFSRISFCTINTKFT*TIFVLMSNY 478
           I LC SVL  LTL     I+    ++    IVT  +   +SF  I    + T  V +S Y
Sbjct: 279 IQLCISVLVALTLYFLMLID----IIPPTSIVTPLILKYLSFTMIMVALSVTCTVFVSFY 334

Query: 479 NFNKYIHSY*YQ 514
           NF K I +  Y+
Sbjct: 335 NFLKMIQNIHYR 346


>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 17  EDTKTIKRLYFLSLIMK*NWYLLISKVTLTLFCFYLCFVGDVCSFEMSF 163
           E TK +KRL F   +   +WY       +T+F +Y+C    V   ++ F
Sbjct: 202 ESTKVMKRLQFSVAVFLGSWY-------ITIFTYYVCIAVGVTGEDLHF 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,035
Number of Sequences: 27780
Number of extensions: 268064
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)