Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_F06
         (828 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.           168   2e-43
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    72   2e-14
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    35   0.003
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    24   6.6  
X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein...    23   8.7  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score =  168 bits (408), Expect = 2e-43
 Identities = 82/194 (42%), Positives = 119/194 (61%)
 Frame = +2

Query: 158 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQE 337
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQE
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQE 84

Query: 338 RFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTK 517
           R+ ++   YYRGA   I+VYD  + DSF+  K W++E+ R A  N+   L GNK DL   
Sbjct: 85  RYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADLANS 144

Query: 518 KVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGAAPAGHVKI 697
           +VVD+  AKQYA+   + F+ETSAK + NV   F+ +A ++     P + GA P  +++ 
Sbjct: 145 RVVDYEEAKQYADDNRLLFMETSAKTAVNVNDIFLAIAKKL-----PKNEGAGPQQNIRP 199

Query: 698 DQGQPIDTGKSSCC 739
            Q +  +   S CC
Sbjct: 200 TQNE-TNRQNSGCC 212


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 72.1 bits (169), Expect = 2e-14
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
 Frame = +2

Query: 161 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 340
           K +++GD  VGK+C+L+ +  D++   Y+ T   ++    V ++G  + L +WDTAGQE 
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQED 66

Query: 341 FRTITSSYYRGAHGIIIVYDCTDQDSFSNV-KQWLEEIDRYACDNVNKLLVGNKCDL 508
           +  +    Y      +I Y      SF NV  +W  EI ++ C +   +LVG K DL
Sbjct: 67  YDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEI-KHHCPDAPIILVGTKIDL 122


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 35.1 bits (77), Expect = 0.003
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 323 TAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEIDRYACDNVNKLLVGNK 499
           +AGQE +  +    Y      ++ +      SF NVK+ W+ EI  + C     LLVG +
Sbjct: 1   SAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQ 59

Query: 500 CDL 508
            DL
Sbjct: 60  IDL 62


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 711  PSTPASPRAAEYCLLTHERACVTRGXRQTR 800
            P+ PASPR A+      ER    R  R+ R
Sbjct: 1132 PTPPASPRTAQRRAALRERQARFRERRRNR 1161


>X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein
           Agm1 protein.
          Length = 498

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 398 DCTDQDSFSNVKQWLEEI 451
           D T Q  + N+K+WL+ +
Sbjct: 329 DTTGQQFYDNIKRWLDVV 346


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 766,709
Number of Sequences: 2352
Number of extensions: 14527
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 88150236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)