Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E24
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571     31   0.87 
08_01_0236 + 1982202-1982379,1982587-1982802,1982994-1983211,198...    31   1.5  

>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
          Length = 740

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = -2

Query: 156 ANNNGKVLTLISSSISKIGADFSLNKVIFNYSIETNQIRNSEYKF 22
           + N+G ++++ SS  S+IGAD SL  ++   S++ N ++N   +F
Sbjct: 492 SGNSGSIISISSSEASEIGADNSL--MVQEVSVDANVLKNLCQRF 534


>08_01_0236 +
           1982202-1982379,1982587-1982802,1982994-1983211,
           1983718-1984341
          Length = 411

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 176 NVINFHIYEHQEELWKEAFKNKSNVKVYSEYQDEKYDIYTKIPCTMIV-DSVHQMFYSLG 352
           NVI FH  +H++E ++      +N    S +++ ++++  K+  T +V    H+M+ S G
Sbjct: 349 NVILFHGDDHEDECFEFVL---TNYDEESSFKEGRFELQVKVIWTGVVRTGEHKMWESTG 405

Query: 353 SNKFM 367
            N+ +
Sbjct: 406 RNRML 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,759
Number of Sequences: 37544
Number of extensions: 288841
Number of successful extensions: 656
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)