Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E23
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 32 0.10
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.55
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.55
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 28 1.3
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 28 1.7
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 2.2
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 2.9
SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.9
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 27 3.9
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 5.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.8
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 26 6.8
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 26 6.8
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 6.8
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 26 6.8
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 26 6.8
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 25 9.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 9.0
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T T + +S T GT +E TAGTIT++
Sbjct: 479 TSGTVEVVEPTAGTITETIVSGSKTFTSTFPASGTTSGTVEVVEPTAGTITET 531
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T T + ++ T GT +E TAGTIT++
Sbjct: 689 TSGTVEVVEPTAGTITETIVSGSKTFTSTFPANGTTSGTVEVVEPTAGTITET 741
Score = 29.5 bits (63), Expect = 0.55
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + T T + ++ T GT +E TAGTIT++
Sbjct: 409 TSGTVEVVEPTAGTITKTIVSGSKTFTSTFPANGTTSGTVEVVEPTAGTITET 461
Score = 28.7 bits (61), Expect = 0.96
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + ++ T GT +E TAGTIT++
Sbjct: 514 TSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVEPTAGTITET 566
Score = 28.7 bits (61), Expect = 0.96
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + ++ T GT +E TAGTIT++
Sbjct: 654 TSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVEPTAGTITET 706
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + ++ T GT +E TAGTIT++
Sbjct: 374 TSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVEPTAGTITKT 426
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + + + T GT +E TAGT+T++
Sbjct: 899 TSGTVEIVAPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVTET 951
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + + + T GT +E TAGT+T++
Sbjct: 969 TSGTVEIVAPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVTET 1021
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + +S T GT +E TAGTIT++
Sbjct: 339 TSGTVEVVEPTAGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTITET 391
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + +S T GT +E TAGT+T++
Sbjct: 549 TSGTVEVVEPTAGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVTET 601
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + +S T GT +E TAGTIT++
Sbjct: 619 TSGTVEVVEPTAGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTITET 671
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + +S T GT +E TAGT+T++
Sbjct: 724 TSGTVEVVEPTAGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVTET 776
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + +S T GT +E TAGT+T++
Sbjct: 584 TSGTVEVVEPTAGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVTET 636
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + ++ T GT +E TAGTIT++
Sbjct: 234 TSGTVEVVEPTAGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTAGTITET 286
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + ++ T GT +E TAGTIT++
Sbjct: 269 TSGTVEVVEPTAGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTAGTITET 321
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + ++ T GT +E TAGTIT++
Sbjct: 444 TSGTVEVVEPTAGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTAGTITET 496
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
+SG E + + + +T + ++ T GT +E TAGT+T++
Sbjct: 304 TSGTVEVVEPTAGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTAGTVTET 356
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +2
Query: 563 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQS 721
SSG + + + +T + + + T GT +E TAGT+T++
Sbjct: 794 SSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVTET 846
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 29.5 bits (63), Expect = 0.55
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 4/206 (1%)
Frame = +2
Query: 128 DPYHQSLFAKLENPDVVYXNFVKRLAKYHFQVKAIIQDILXCRESMEKLNELNEKGRAKI 307
+P +LF KL N ++ + L K + + +L +S+ KL+ L E K+
Sbjct: 22 EPLEANLFGKLHNKLLICKAKKENLEK-KLAYQMMYSKLL---KSLPKLSSLEENKLTKL 77
Query: 308 TEVREELENLYLYGKETGDTXYDTELESQRHLLACLLKEFXDANINSMFAIEKAQREDLL 487
E++EN +E +TEL + L L F ++++ I K
Sbjct: 78 KAPIEDMENTKKELEEIRKQSTETELRYLKSLSNTL--SFGTLSLSN--EINKVGPSASF 133
Query: 488 XCSDNEKSSVRQRKKKMDKDGLVKMSSGVTE----QLLSVSRQLADTTQKSQNTLDNLVS 655
+ SV+ +++++K GL++ S +E +L+ + D+ QK + + +
Sbjct: 134 MLKE-VHDSVQVLEQRLEKMGLIEKPSESSESSIYSILASLKHTNDSLQKKELSPHEIAE 192
Query: 656 SSSTVHGTQSELENTAGTITQSSKLL 733
S S+ H T S + T T S L+
Sbjct: 193 SPSS-HST-SPMGRNVDTETLSFLLI 216
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.55
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 15/199 (7%)
Frame = +2
Query: 188 FVKRLAKYHFQVKAIIQDILXCRESMEKLNELN---EKGRAKIT----EVREELENLYLY 346
F ++LAK Q+K Q+ S +KLNE + E IT + +L+ L L
Sbjct: 586 FQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQLE 645
Query: 347 G---KETGDTXYDTELESQRHLLACLLKEFXDANINSMFAIEKAQREDLLXCSDNEKSSV 517
++ T D + + LL L+E + I ++ ++ D KS
Sbjct: 646 RANFEQKESTLSDENNDLRTKLLK--LEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEE 703
Query: 518 RQRKKKMDKDGL---VKMSSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSE 688
R K++ L + G E L + L + ++NT N + SS ++
Sbjct: 704 ALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNT--NAILSSELTKSSEDV 761
Query: 689 LENTAG--TITQSSKLLKE 739
TA T+TQ SK +K+
Sbjct: 762 KRLTANVETLTQDSKAMKQ 780
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 515 VRQRKKKMDKDGLVKMSSGVTEQLLSVSRQLADTTQKSQNTLDNLV 652
++ +K ++ V SS E +VSR L+ T +K + LDN +
Sbjct: 438 IQALRKNINNASTVFNSSNTAESSDNVSRSLSSTERKKRRELDNAI 483
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/68 (22%), Positives = 34/68 (50%)
Frame = +2
Query: 533 KMDKDGLVKMSSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTI 712
K+ + L K +++ ++ QL+ ++S+N + +L+ + T+ +LE
Sbjct: 15 KLPMESLKKKFLKQNREIIKINTQLSIKIRESENEIQDLIQENFTLKSYLVKLEARFRNQ 74
Query: 713 TQSSKLLK 736
+Q+ LLK
Sbjct: 75 SQTEDLLK 82
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 626 SQNTLDNLVSSSSTVHGTQSELENTAGTIT 715
S+ L S+S ++ GT +E TAGT+T
Sbjct: 193 SEEFTTTLASASGSISGTVEVIEPTAGTVT 222
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 401 LLACLLKEFXDANINSMFAIEKAQREDL 484
+L C+LKE+ D + S FA+ A + L
Sbjct: 917 ILECMLKEYYDTFLKSPFAVPNAVQAQL 944
>SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 81
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +2
Query: 560 MSSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQSS 724
M S V V+ LA S N +S+ T +GT T+ T TQSS
Sbjct: 1 MYSRVLSVAAIVTMALAVQAANSTAPYGNTTNSTGTTNGTNGTNTTTSSTATQSS 55
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 590 SVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQSS 724
S S + TT++ QN+ LV SS+ VH S L+N I ++
Sbjct: 444 SFSTKTLATTKEIQNS-PTLVESSTVVHHDPSYLQNQTSEINDTN 487
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 530 KKMDKDGLVKMSSGVTEQLLSVSRQLADT 616
KK+D GL+ M++G+ LLS+S DT
Sbjct: 295 KKLDIIGLILMTAGLALVLLSISLASYDT 323
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 560 MSSGVTEQLLSVSRQLADTTQKSQ--NTLDNLVSSSSTVHGTQSELENTAGTITQSS 724
+SS + SVS + T + +T + +SSSS V + S +++ T+T SS
Sbjct: 178 LSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSS 234
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 6.8
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Frame = +2
Query: 341 LYGKETGDTXYD----TELESQRHLLACLLKEFXDANINSMFAIE------KAQREDLLX 490
L+G+ GDT Y+ +ELE + + + + + K +RE +
Sbjct: 129 LFGRVVGDTIYNVVRISELELDANQRPVFPPKIISTEVIDNYFTDIKPRSTKEEREKIAN 188
Query: 491 -CSDNEKSSVRQRKKKMDKDGLVKMSSGVTEQLLSVSRQLADTT---QKSQNTLD---NL 649
+ EK R + K + +S G + V + L T + S T + +L
Sbjct: 189 ELAHQEKQKERNKLLKSGRRNKAVLSFGDEVDMPIVKKPLRQKTPVSRSSDTTTELSKDL 248
Query: 650 VSSSSTVHGTQSELE 694
+SSSS++H T S +
Sbjct: 249 ISSSSSIHSTYSSAQ 263
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 584 LLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQSSKLLKEIRT 748
L V RQ+ D + TL VSSS QS L++ G + Q + + IR+
Sbjct: 49 LKEVERQITDLIVHEETTLTKNVSSSL---NAQSYLQDIEGKLEQLMLVYERIRS 100
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.8
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 431 DANINSMF--AIEKAQREDLLXCSDNEKSSVRQRKKKMDKDGLVKMSSGVTEQLLSVSRQ 604
D+ +N F A+ A+ ++L C +N+ S K++ + +V M + LLSV +
Sbjct: 616 DSIVNGDFEKAVLSAKEMEVL-CENNDLS------KQLTSEEIVHMKLLIQLGLLSVKVK 668
Query: 605 LADTTQKSQNTLDNLVSS 658
D S T++NL+ S
Sbjct: 669 NGDYENSSFETIENLIES 686
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 446 SMFAIEKAQREDLLXCSDNEKSSVRQRKKKMDKDGLVKMS 565
S AI K +L DN ++S+R K D+D L+ S
Sbjct: 24 STLAISKVISSKILQFEDNSETSLRHDLPKYDQDRLLLTS 63
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/85 (21%), Positives = 35/85 (41%)
Frame = +2
Query: 128 DPYHQSLFAKLENPDVVYXNFVKRLAKYHFQVKAIIQDILXCRESMEKLNELNEKGRAKI 307
D Y L L+ D ++L+ Y + + ++ I ++E+L NE+ ++
Sbjct: 351 DFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRISELEHTIEQLTINNERDNERM 410
Query: 308 TEVREELENLYLYGKETGDTXYDTE 382
+ ELE + D+ D E
Sbjct: 411 SPAEFELETTQEVEENDSDSHDDEE 435
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 302 KITEVREELENLYLYGKETGDTXYDTELESQRHLLACL-LKEFXDANINSMFA 457
K T+ EEL+ L LY E D+E + + +L + L F NI+ FA
Sbjct: 130 KNTKDMEELKALILYAMENARLFLDSEQNAAKGVLGLVDLTYFSRKNIDLDFA 182
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 563 SSGVTEQLLSV---SRQLADTTQKSQNTLDNLVSSSSTV-HGTQSELENTAGTITQSSK 727
SS ++E + S+ S + + S +T L SSSST+ T+SE + + + + +SK
Sbjct: 962 SSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIPSSTRSESNSESASTSSASK 1020
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,142
Number of Sequences: 5004
Number of extensions: 55682
Number of successful extensions: 221
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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