Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E23
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    28   0.11 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.2  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 119 SPTDPYHQSLFAKLENPDVVYXNFVKRLAKYHF 217
           +PTD Y +S F  L+NP V    F+   A   F
Sbjct: 540 TPTDSYIRSFFELLQNPKVSNEQFLNTAATLSF 572


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 444 IVCLLLKRHKEKI 482
           I+C+ +KR KEKI
Sbjct: 672 IICINIKRQKEKI 684


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 188 FVKRLAKYHFQVKAIIQDILXCRESMEKLNELNEKGRAKITEVREEL 328
           F + +   H+QVKA+++ ++  + S   +         K  E  EEL
Sbjct: 257 FTRTIPSDHYQVKAMVEIVMKMKWSYVSIIYEESNYGIKAFEELEEL 303


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 178 LSEFREEIG*VSFSSQSNYPGY 243
           LS F ++IG  ++ +Q N  GY
Sbjct: 209 LSYFTQDIGLAAYYAQVNLAGY 230


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 672 MEHNRNWKIQQERLRNRANY*RK 740
           +   R W IQQER R      +K
Sbjct: 36  LRRRREWMIQQEREREHERLKKK 58


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 672 MEHNRNWKIQQERLRNRANY*RK 740
           +   R W IQQER R      +K
Sbjct: 36  LRRRREWMIQQEREREHERLKKK 58


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 672 MEHNRNWKIQQERLRNRANY*RK 740
           +   R W IQQER R      +K
Sbjct: 36  LRRRREWMIQQEREREHERLKKK 58


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 672 MEHNRNWKIQQERLRNRANY*RK 740
           +   R W IQQER R      +K
Sbjct: 36  LRRRREWMIQQEREREHERLKKK 58


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 672 MEHNRNWKIQQERLRNRANY*RK 740
           +   R W IQQER R      +K
Sbjct: 36  LRRRREWMIQQEREREHERLKKK 58


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 672 MEHNRNWKIQQERLRNRANY*RK 740
           +   R W IQQER R      +K
Sbjct: 36  LRRRREWMIQQEREREHERLKKK 58


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 672 MEHNRNWKIQQERLRNRANY*RK 740
           +   R W IQQER R      +K
Sbjct: 36  LRRRREWMIQQEREREHERLKKK 58


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 672 MEHNRNWKIQQERLRNRANY*RK 740
           +   R W IQQER R      +K
Sbjct: 36  LRRRREWMIQQEREREHERLKKK 58


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 157 FCK-QRLMIWVRWTQIHFEGHC 95
           FC  +R+++  R  Q H E HC
Sbjct: 226 FCAARRIVLEERRAQSHLEAHC 247


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 545 PYPSFSFFVGLMT 507
           PYPS+  ++G++T
Sbjct: 636 PYPSYYSYIGVLT 648


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 99  WPSKWI*VQRTHIINRCL 152
           W SKW+ +  +    RCL
Sbjct: 69  WQSKWLSINHSACAIRCL 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,925
Number of Sequences: 438
Number of extensions: 4208
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)